| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3776 |
|---|
| Symbol | |
|---|
| ID | 4924196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4494661 |
|---|
| End bp | 4496457 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640165402 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001095901 |
|---|
| Protein GI | 127514704 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.218056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTCC AACAGTATCA TCCCATCAGC CTGATGCAGG CCCAGAGCCA GCAACGTGGC
GATGCCATCG CATTGGAAGG CTACGGCTTA TCGGCCCCTT GGCAGCAGAT CAGTTGGCGA
CGATTCGACG AGATTGGTGA CCAGATCGCT AAGGCGCTGA TCGCTTCTGG CTTCGCGGCC
CAAGACAAGG TGGCGATCCT GTCGCAAAAC TGCCCCCAGT GGACCTGTGC CGATGTCGGT
GTCCTCAAGG CCAAGGCTGT GGTGGTACCT ATCTATCCCA CCAGTACCCT GGAGCAGGCG
CGCTACATCA TAGACGACGC CCAGGCCAAG CTGATCTTTG TCGGTGACGC CGAGCAGTAC
CGCATGGCCC GTGAACTGCT TGCAATCTGC CCCAGCCTGA CCCAGATAGT GGTCTTCGAT
GCCGAGGTGG CACTTAAGCA AGAGGATACG GCTGTTCATT TCGATAGCCT GCTGACGCAA
ACCCATTCGC CCGAGGTCGA TGCCGAACTG GCTCACCGTC TGGCTAACTT GGCCCTGGAC
GATCTGCTGA CCCTGATCTA CACCTCGGGC ACCACGGGGG ACCCTAAAGG GGTGATGCTG
GATTACCGCA ATATCGCCTC TGTGATCCGC CAGCACGATA CCATTTTGCC CTTCACGCCT
GGCGATGTGT CGCTGGCCTT CCTGCCGCTG AGTCATGTGT TCGAACGGGG CTGGAGCTTC
TATGTGTTGT GCCGCGGCGG CCATAACGTC TACCTCAAAG ATCCTATGAC GGTGAAAGAG
GCGATCGTCG ATATTCGTCC CCACACCCTA TGCGTGGTAC CGCGTTTCCT GGAGAAGGTC
TACAGCGCGG TGCAGGACAA GGTGAATAAG GCGCCCGACA CTCGCAAGAA GCTGTTCGCC
TGGGCCATGT CTGTGGGTGA GCGTCAGTTC GAGGTCAGCC AGGGGCGTGC TAAGGCTTCC
TGGTGGCTCA AGACCCAGTG GAAACTGGCC CATAAGCTGG TGTACAGCAA GCTGCAGCAG
GTGCTGGGTG GCAGGCTTAA GTTTATGCCT TGCGGCGGCG CGGCGCTGGA TCAGAACGTG
GCCAGCTTCT TCCATGGCAT CGATATTCCC GTGCTCTGTG GCTACGGCAT GACGGAGACC
ACGGCGACCG TGACCTGTAA TACCCTGGAT AACCGCGTCG CCGGCTCTAA CGGTAAGACG
CTGCCGGAAG TCGAGATCAA GCTGGGTAAA GACAACGAGA TCCTGGTGCG CGGCGATACC
GTGATGCGCG GCTACTACAA CCGCCCTCAG GAGACCGCCG ACAGCTTCGA AGATGGCTGG
TTGAAGACGG GCGATGCAGG TCAGATAGAC GAGCAGGGCA ACCTGTTTAT CACAGACAGA
ATCAAAGAGT TGATGAAGAC CTCCAACGGC AAATACATAG CGCCGCAGCG GGTCGAGGGT
AAGGTAGGTT GCTGCCCCTT CATCGAGCAG GTGGCGGTGA TCGCCGATGC GAAAAACTAT
GTGACCGCGC TTATCGTACC GGCGTTCGAG TCGTTAGAGG CTTGGGCCGA GGAGAAGGGA
CTACATTACG AGTCGCCCAT GGAGCTACTG CGCCACAGTC ATGTGATCGA GCACTTCGAG
CAGCGCCTCA AGCATCTGCA GCAGGAGCTG GCGGGCTTCG AGAAGATCAA GAAGTTTACC
CTGCTGCCCG AGGCATTTTC CATGGAGGCT GGCCTACTGA CGCCGACCAT GAAGCTAAGG
CGTAAGATGA TCTACCATAA GTACGCCACC GAAATTAACG CTATGTATGT GAAATAG
|
|---|
| Protein sequence | MSLQQYHPIS LMQAQSQQRG DAIALEGYGL SAPWQQISWR RFDEIGDQIA KALIASGFAA
QDKVAILSQN CPQWTCADVG VLKAKAVVVP IYPTSTLEQA RYIIDDAQAK LIFVGDAEQY
RMARELLAIC PSLTQIVVFD AEVALKQEDT AVHFDSLLTQ THSPEVDAEL AHRLANLALD
DLLTLIYTSG TTGDPKGVML DYRNIASVIR QHDTILPFTP GDVSLAFLPL SHVFERGWSF
YVLCRGGHNV YLKDPMTVKE AIVDIRPHTL CVVPRFLEKV YSAVQDKVNK APDTRKKLFA
WAMSVGERQF EVSQGRAKAS WWLKTQWKLA HKLVYSKLQQ VLGGRLKFMP CGGAALDQNV
ASFFHGIDIP VLCGYGMTET TATVTCNTLD NRVAGSNGKT LPEVEIKLGK DNEILVRGDT
VMRGYYNRPQ ETADSFEDGW LKTGDAGQID EQGNLFITDR IKELMKTSNG KYIAPQRVEG
KVGCCPFIEQ VAVIADAKNY VTALIVPAFE SLEAWAEEKG LHYESPMELL RHSHVIEHFE
QRLKHLQQEL AGFEKIKKFT LLPEAFSMEA GLLTPTMKLR RKMIYHKYAT EINAMYVK
|
|---|
| |