Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3772 |
Symbol | |
ID | 4924192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4492259 |
End bp | 4492687 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640165398 |
Product | thioesterase superfamily protein |
Protein accession | YP_001095897 |
Protein GI | 127514700 |
COG category | [R] General function prediction only |
COG ID | [COG0824] Predicted thioesterase |
TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.478707 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCAGT TCGCTAGCCA GTTTCCCTTT CACACCCGCA TCCCAGTCGC CTGGGGCGAG ATGGATGCCC TGAAGCACGT CAACAATGCG GTCTATTTCC GTTACTTCGA GACGGCGCGG ATAGACTTCT TTAACCAGCT GTTTCCGCTG GATAAGCTCT ACCAATACGG CATGGGCCCA GTGATCAGCG ACAACCATGC ACGCTACAAG CGCCCGGTCA CCTTCCCCGA CACCCTATTG ATCGGCGTCA GCATCAGCGA CATCCACAAG GACCGCTTCA CCATGCATTA TCAGGTGTTC AGCGAGCAGC AACAGGCGAT CACCACTAAG GGCTCCTCGG TCGCCGTCAT GTTCGACTTC AACAAGCAAG CCAAGGCAAA TCTGCCCGAG GAGTTACTGG CCGTGCTCAA GGATCACTGC ATCGACTAA
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Protein sequence | MEQFASQFPF HTRIPVAWGE MDALKHVNNA VYFRYFETAR IDFFNQLFPL DKLYQYGMGP VISDNHARYK RPVTFPDTLL IGVSISDIHK DRFTMHYQVF SEQQQAITTK GSSVAVMFDF NKQAKANLPE ELLAVLKDHC ID
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