Gene Shew_3772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3772 
Symbol 
ID4924192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4492259 
End bp4492687 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content56% 
IMG OID640165398 
Productthioesterase superfamily protein 
Protein accessionYP_001095897 
Protein GI127514700 
COG category[R] General function prediction only 
COG ID[COG0824] Predicted thioesterase 
TIGRFAM ID[TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.478707 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCAGT TCGCTAGCCA GTTTCCCTTT CACACCCGCA TCCCAGTCGC CTGGGGCGAG 
ATGGATGCCC TGAAGCACGT CAACAATGCG GTCTATTTCC GTTACTTCGA GACGGCGCGG
ATAGACTTCT TTAACCAGCT GTTTCCGCTG GATAAGCTCT ACCAATACGG CATGGGCCCA
GTGATCAGCG ACAACCATGC ACGCTACAAG CGCCCGGTCA CCTTCCCCGA CACCCTATTG
ATCGGCGTCA GCATCAGCGA CATCCACAAG GACCGCTTCA CCATGCATTA TCAGGTGTTC
AGCGAGCAGC AACAGGCGAT CACCACTAAG GGCTCCTCGG TCGCCGTCAT GTTCGACTTC
AACAAGCAAG CCAAGGCAAA TCTGCCCGAG GAGTTACTGG CCGTGCTCAA GGATCACTGC
ATCGACTAA
 
Protein sequence
MEQFASQFPF HTRIPVAWGE MDALKHVNNA VYFRYFETAR IDFFNQLFPL DKLYQYGMGP 
VISDNHARYK RPVTFPDTLL IGVSISDIHK DRFTMHYQVF SEQQQAITTK GSSVAVMFDF
NKQAKANLPE ELLAVLKDHC ID