Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3756 |
Symbol | |
ID | 4920748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4471917 |
End bp | 4473449 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640165382 |
Product | histidine ammonia-lyase |
Protein accession | YP_001095881 |
Protein GI | 127514684 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0185291 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCATC TAGTATTAAA GCCAGGCACC CTGAGCCTGG CACAGCTAAG AGCCATCAGC CGTGGCAAGG TGAGCCTGGA GCTGTGTGAC AGCGCCGTGG CCGACATCAA CACCAGTGCC GGTCTGGTAC AGAAGGTGCT TGACGAAGGC CGCACCGTCT ACGGCATCAA CACAGGCTTC GGTCTGCTGG CCAACACTAA GATTGGTGAG CAGGATCTGC AGCTGCTGCA GCGCTCTATC GTGTTGTCAC ACGCCGCCGG TACAGGCCAG TATATGCAAG ACGCGACCGT GCGCCTGATG ATGGTGTTGA AGATCAACTC CTTGAGCCGT GGCTTCTCAG GTATTCGTCT CGAGGTGATC AACTTCCTGA TCGCCCTGGT GAACGCCGAA GTTTACCCCT GTGTGCCCGA GAAGGGCTCG GTAGGCGCCT CGGGCGACCT GGCACCGCTG TCACACATGT GTCTGCCGCT GCTGGGCGAA GGCGAGATGA GCTACAAGGG ACAGATCATC TCGGCCGCCG AAGGTTTGGA GATTGCCGGC CTTAAGCCGA TTGAACTGGC GGCGAAGGAA GGTCTGGCGC TGCTCAACGG CACCCAGGCT TCTACCGCCC TAGCGCTGGA AGGTCTGTTC AACGCCGAAG ATCTGTTTGC GGCCAGCTCA GTGATCGGCG CCATGAGCGT CGAGGCCGCC ATGGGCAGTC GTAGCCCATT CGACCCACGC ATCCATGCGG CCCGTGGTCA GAAGGGTCAG ATCGACTCGG CCGCCGTGTT CCGTCACCTG CTGGGTGATG AGTCTGAGAT CAGCCTGGAT CACATCAACT GTGAGAAGGT GCAAGATCCT TATTCGCTGC GTTGTCAGCC GCAGGTGCTG GGTGCCTGTC TGACTCAGAT CCGTCACGCC GCCGAGGTGC TGGCCACCGA AGCCAACGGC GTAACCGATA ACCCACTGGT GTTCCAGGAT ACCGGCGACA TCATCTCGGG CGGTAACTTC CACGCCGAGC CTGTGGCCAT GGCGGCGGAC AATCTGGCGA TCGCTTTGGC CGAGCTGGGC TCCATCGCCG AGCGTCGTAT CGCCCTGCTG ATCGACTCTA ACCTCTCTAA GCTGCCACCA TTCCTAGTGG AAAACGGCGG GGTGAACTCA GGCTTCATGA TCGCCCAGGT GACTGCGGCG GCCCTGGCCT CTGAGAACAA GACCTACGCC CATCCAGCCT CGGTCGACAG CCTGCCGACC TCGGCCAACC AGGAAGATCA CGTCTCTATG GCGACCTTTG CGGCGCGTCG TCTGCGCGAC ATGTCGGAAA ACACCCGTGG CGTGCTGGCA GTTGAACTAC TGGCGGCGGC TCAGGGCCTG GATTTCCGCG CACCGCTGCA GCCTGCAACG GCCGTGGCTA AGGCTAAGGC CGAGCTACGT GAGGTGGTGG CCTACTATGA TAAGGACAGA TTCTTCGGTC CGGATATCGA GGCGGCTACC GACCTGCTAT TGAGCGCCAG TTACAACCAG TATCTACCGG CGGGCGTGCT ACCTAGCCTC TAG
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Protein sequence | MSHLVLKPGT LSLAQLRAIS RGKVSLELCD SAVADINTSA GLVQKVLDEG RTVYGINTGF GLLANTKIGE QDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI NFLIALVNAE VYPCVPEKGS VGASGDLAPL SHMCLPLLGE GEMSYKGQII SAAEGLEIAG LKPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDPR IHAARGQKGQ IDSAAVFRHL LGDESEISLD HINCEKVQDP YSLRCQPQVL GACLTQIRHA AEVLATEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG SIAERRIALL IDSNLSKLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM ATFAARRLRD MSENTRGVLA VELLAAAQGL DFRAPLQPAT AVAKAKAELR EVVAYYDKDR FFGPDIEAAT DLLLSASYNQ YLPAGVLPSL
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