Gene Shew_3756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3756 
Symbol 
ID4920748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4471917 
End bp4473449 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content61% 
IMG OID640165382 
Producthistidine ammonia-lyase 
Protein accessionYP_001095881 
Protein GI127514684 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0185291 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCATC TAGTATTAAA GCCAGGCACC CTGAGCCTGG CACAGCTAAG AGCCATCAGC 
CGTGGCAAGG TGAGCCTGGA GCTGTGTGAC AGCGCCGTGG CCGACATCAA CACCAGTGCC
GGTCTGGTAC AGAAGGTGCT TGACGAAGGC CGCACCGTCT ACGGCATCAA CACAGGCTTC
GGTCTGCTGG CCAACACTAA GATTGGTGAG CAGGATCTGC AGCTGCTGCA GCGCTCTATC
GTGTTGTCAC ACGCCGCCGG TACAGGCCAG TATATGCAAG ACGCGACCGT GCGCCTGATG
ATGGTGTTGA AGATCAACTC CTTGAGCCGT GGCTTCTCAG GTATTCGTCT CGAGGTGATC
AACTTCCTGA TCGCCCTGGT GAACGCCGAA GTTTACCCCT GTGTGCCCGA GAAGGGCTCG
GTAGGCGCCT CGGGCGACCT GGCACCGCTG TCACACATGT GTCTGCCGCT GCTGGGCGAA
GGCGAGATGA GCTACAAGGG ACAGATCATC TCGGCCGCCG AAGGTTTGGA GATTGCCGGC
CTTAAGCCGA TTGAACTGGC GGCGAAGGAA GGTCTGGCGC TGCTCAACGG CACCCAGGCT
TCTACCGCCC TAGCGCTGGA AGGTCTGTTC AACGCCGAAG ATCTGTTTGC GGCCAGCTCA
GTGATCGGCG CCATGAGCGT CGAGGCCGCC ATGGGCAGTC GTAGCCCATT CGACCCACGC
ATCCATGCGG CCCGTGGTCA GAAGGGTCAG ATCGACTCGG CCGCCGTGTT CCGTCACCTG
CTGGGTGATG AGTCTGAGAT CAGCCTGGAT CACATCAACT GTGAGAAGGT GCAAGATCCT
TATTCGCTGC GTTGTCAGCC GCAGGTGCTG GGTGCCTGTC TGACTCAGAT CCGTCACGCC
GCCGAGGTGC TGGCCACCGA AGCCAACGGC GTAACCGATA ACCCACTGGT GTTCCAGGAT
ACCGGCGACA TCATCTCGGG CGGTAACTTC CACGCCGAGC CTGTGGCCAT GGCGGCGGAC
AATCTGGCGA TCGCTTTGGC CGAGCTGGGC TCCATCGCCG AGCGTCGTAT CGCCCTGCTG
ATCGACTCTA ACCTCTCTAA GCTGCCACCA TTCCTAGTGG AAAACGGCGG GGTGAACTCA
GGCTTCATGA TCGCCCAGGT GACTGCGGCG GCCCTGGCCT CTGAGAACAA GACCTACGCC
CATCCAGCCT CGGTCGACAG CCTGCCGACC TCGGCCAACC AGGAAGATCA CGTCTCTATG
GCGACCTTTG CGGCGCGTCG TCTGCGCGAC ATGTCGGAAA ACACCCGTGG CGTGCTGGCA
GTTGAACTAC TGGCGGCGGC TCAGGGCCTG GATTTCCGCG CACCGCTGCA GCCTGCAACG
GCCGTGGCTA AGGCTAAGGC CGAGCTACGT GAGGTGGTGG CCTACTATGA TAAGGACAGA
TTCTTCGGTC CGGATATCGA GGCGGCTACC GACCTGCTAT TGAGCGCCAG TTACAACCAG
TATCTACCGG CGGGCGTGCT ACCTAGCCTC TAG
 
Protein sequence
MSHLVLKPGT LSLAQLRAIS RGKVSLELCD SAVADINTSA GLVQKVLDEG RTVYGINTGF 
GLLANTKIGE QDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI
NFLIALVNAE VYPCVPEKGS VGASGDLAPL SHMCLPLLGE GEMSYKGQII SAAEGLEIAG
LKPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDPR
IHAARGQKGQ IDSAAVFRHL LGDESEISLD HINCEKVQDP YSLRCQPQVL GACLTQIRHA
AEVLATEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG SIAERRIALL
IDSNLSKLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM
ATFAARRLRD MSENTRGVLA VELLAAAQGL DFRAPLQPAT AVAKAKAELR EVVAYYDKDR
FFGPDIEAAT DLLLSASYNQ YLPAGVLPSL