| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3752 |
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| Symbol | |
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| ID | 4920927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4468492 |
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| End bp | 4469742 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165378 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001095877 |
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| Protein GI | 127514680 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00582407 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGATCAAG AATTACGCGC ACAGGTGTCG CTCTGGTTGA CCCACTTCGG CATAGATAGC
CCCTCGGACG GGGTCTCTAC CGGCGTCATG GTCTTTGCTT GTCTGTTGAT CGCCTTCATC
GGCTATGTAG TGGTGAAACG CGGCGTGGTG AGCACAATGA ACATAGTGAT CCAGCGCTCT
AAGGTGCGTT GGGACGACAT CTTCATGCAG CACAGGGTGC TGGAGAAGCT GGCCAAGTTG
GTACCTGCCT TGATCCTCAA CATCTTGCTG CCGCTGGCCT TGGTGGAGCA TCCGCTGCTT
AGCAGCCTGG CGGATAGATT GCTGGATGTG GCGATAGTGA TCCTCTTCGT GCGCGCCGTC
TACAGCGTGC TGGACGCGGG TAACGAGATC GCCGACGTCA ACCAGATCAG CCGCCGGTTG
CCGATCAAGA GTTTCGTGCA GCTGCTCAAG CTGTTTATGT TCTTCGTCGC CATCGTCATC
TCGATCTCCG TACTGGCCGA GCAGTCGCCG GTCTACTTCC TCAGCGGCCT GGGTGTCGCC
ACGGGCCTGG TGATGTTGGT GTTCAAAGAC ACTATCTTGG GGTTCGTGGC CGGCATTCAG
CTGGCGGCCA ACCGCATGGT CAGCCCGGGT GACTGGATCC AGATGGATAA GTACGGCGCC
GATGGCGCGG TGGAAGAGGT CTCGCTGACC ACGGTCAAGG TGCAGAATTG GGACAAGACA
ATCACTATGA TCCCCGCCTA TGCCCTGGTG TCCGACGCCT TCAAGAACTG GCGCGGCATG
TCAGAGTCTG GCGGCCGGCG CATCAAGCGG GCGGTGAATA TCGACATCGA TTCCATCGCC
TTTCTCAGTG ATGAACAGCT TAAGCGCCTG GGTAAGATCA ACCTGCTCAA GGAGTACCTG
GCCCGCAAAG AGGTGGAGAT TGCCGAGTTC AACGCCAAGA TTCAGGATGG TGACATGCCG
GTGAATAGCC GCAACCTCAC CAATGTCGGT ACCTTCAGGG CCTATCTGCT GGAATATATG
CGTAAGCACC CTAAGGTGCA TCAGGAGATG ACCCTGCTGG TGCGTCAGCT GGCGCCGACC
ACAGAGGGGT TACCCATAGA GATCTATATC TTTACCAATG ATACCCGCTG GGCGTTTTAC
GAGGATATTC AGGCGGATAT CTTCGACCAT ATCTACGCGA TTCTGCCGCA GTTTAACCTG
CGGGCCTTCC AGGCACCGAC CGGCGCCGAT GTGCGCAGTC TTAAGGGTTA G
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| Protein sequence | MDQELRAQVS LWLTHFGIDS PSDGVSTGVM VFACLLIAFI GYVVVKRGVV STMNIVIQRS
KVRWDDIFMQ HRVLEKLAKL VPALILNILL PLALVEHPLL SSLADRLLDV AIVILFVRAV
YSVLDAGNEI ADVNQISRRL PIKSFVQLLK LFMFFVAIVI SISVLAEQSP VYFLSGLGVA
TGLVMLVFKD TILGFVAGIQ LAANRMVSPG DWIQMDKYGA DGAVEEVSLT TVKVQNWDKT
ITMIPAYALV SDAFKNWRGM SESGGRRIKR AVNIDIDSIA FLSDEQLKRL GKINLLKEYL
ARKEVEIAEF NAKIQDGDMP VNSRNLTNVG TFRAYLLEYM RKHPKVHQEM TLLVRQLAPT
TEGLPIEIYI FTNDTRWAFY EDIQADIFDH IYAILPQFNL RAFQAPTGAD VRSLKG
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