| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3735 |
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| Symbol | |
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| ID | 4921029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4448408 |
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| End bp | 4449505 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165361 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001095860 |
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| Protein GI | 127514663 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.315042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00230648 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATACCC CCATGAAACG ACTAATTTTA CTCGGTTTAA TGATTTTTAG TAGTTCGTTT
GTTGTCGCGG ATACCTTGAC ATTGAAGTCT GGCCATCCCG ATTCGTATGT GGTGAAGAAA
GGGGATACCC TTTGGGACAT CTCAGCCCAA TTTCTCAAGG ATCCCTGGCG CTGGCCTAAG
CTCTGGGGCG CTAACCCACA GATCGCCAAC CCTCACCTTA TCTATCCCGG AGACAGACTG
ACCCTGGTCT TTATCGACGG TGAACCCAGA TTGGTGGTCA AGCCTCATAT TCGTAAGAGT
CCCGAAGGAC GTGTCCTGCC TAAAGGCGGC GCGATTCCTG CCGTGGATCT CAGCCTGATT
CAGCCTTATC TGGTGCAAAA CCGAGTCGTC GATGGCGAGT GGTTCGATGA GCAGCCTATG
GTCATGGGGG GCGAGAGCGA GTCTAAGCAC CATGTGACCG ACGATGTTAT CTATATTCAA
GGGGAGCTGA CTCTTGGTGA CAAGTTTGGT GTCTATGCCA AGGGGCGTCA GTTTGAAGAT
GCCGAATCTG GCGATGATCT GGGGCTGGAG GTGATTCTGA CCGCCAGCGG CCGTGTCATA
GAGTCGGGCC CAGTGTCTAA GGTACGTTTG CTGAGCAATA TGCGCGAGAC CAAGGCGGGT
TATCGTGTGC TGCCTATCGA AGATGATTCG CTAATGTCAG CGTACTTCAT GCCTAAGGCG
GCGACGACGC CTGGCAAGGT GCTCGCCTCA GAGAAAGATG TGCGCGAAAT GGGTAAGCTG
GATGTGGTCT ATATCGACCG TGGTAGCCAA GACGGCGTCG AGACTGGCCA TGTGTTCTCC
ATCTTCCGTG ATGGTGCCGA GGTGGTGATC GATGGTGACG GCAAGCCGGT ACAACCTAAG
GATCGCAGCA CCTATGAGGA ACTGCTGGCC AGTATCTCAT CTGATAATGC CACCAAGATG
CCGGATATCT ATCGCGGTAA GTTGATGGTA TTCAAGGTGT TCGACCGTGT CAGCTTGGGG
CTTATTCTGA TCAACGAGAA GCCTGTGCGC GTCCATGACA AGTTGCTGCA ACCTGACACC
CTGTTAGCGA GCGAATAG
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| Protein sequence | MDTPMKRLIL LGLMIFSSSF VVADTLTLKS GHPDSYVVKK GDTLWDISAQ FLKDPWRWPK
LWGANPQIAN PHLIYPGDRL TLVFIDGEPR LVVKPHIRKS PEGRVLPKGG AIPAVDLSLI
QPYLVQNRVV DGEWFDEQPM VMGGESESKH HVTDDVIYIQ GELTLGDKFG VYAKGRQFED
AESGDDLGLE VILTASGRVI ESGPVSKVRL LSNMRETKAG YRVLPIEDDS LMSAYFMPKA
ATTPGKVLAS EKDVREMGKL DVVYIDRGSQ DGVETGHVFS IFRDGAEVVI DGDGKPVQPK
DRSTYEELLA SISSDNATKM PDIYRGKLMV FKVFDRVSLG LILINEKPVR VHDKLLQPDT
LLASE
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