| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3732 |
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| Symbol | |
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| ID | 4921026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4444955 |
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| End bp | 4446766 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165358 |
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| Product | collagenase |
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| Protein accession | YP_001095857 |
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| Protein GI | 127514660 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00527905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00286894 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGCGTC AATCCCTCTG CGCCCTCTTG CTCGTCGGCC CCAGCTTCTT GGTGGGCTGC
AGCGTCACTG CACCAGGACA GATAACCCCA ACCCCAAGAC AGATAGACTC GATCTTTATC
AATGAGCTAA GCGCCTTGCC GTCACAGCAG CTCTTCAGCC ATGACAACCC CCTGCTCGAT
ACCGCCAGCT TAACTAAGGC ACTACAAGCC ATCATGCAGG CCCAGGATGA GGCGAGCCTA
GATGCCCTGC TCTATTACCT AAGGGCCTTT AGCTATTTCG GCCCCATGGA TAAGCTGACC
GATACCGAAT ATACCGCTCT GACAGATGCC TTAAGCCGAC TTGGCAATAG TCAGTTGATC
GCTCAGGCGC CTAGAATACA GGAGCACTTC GCGGTAACCC TGTATCGTTA CTATGGAATT
GATGACAAAG ATGACAAAGT CAATGACCAG CGCGCCCAGC AGCTTGCTAG CTTGCTCCCC
CTACTTAATC GGCAACTAAA GAGAACCGCA AAGCAAGCGC CTAGTCAGGC AGCAGATTAT
GCCCTATGGG AGACACTCAG AGCCTATGGC ATGCTGCTAA ATATCGCGCG CAAACAGCCC
GATCGCGCAC TCAATAAGCA GTTGATCGCC GCCGAACTGG ATAAGCCCCT GCTCGACTTT
GCCGCCTCAG CACTAAGCCT GCATGGTCAG CAAGACTGGC CGAGAGCCAA TGCCTATTGG
GCACTGGGCC TCTACCGCCT AGCACTCCCC AGCGGCGAAG AGGGCAAGCT CACCCCAGCA
GAACAGGCAC TGGACGATGC CATGGTAAGA CTCGCCGAGC AGGATGTCGC CCAACGTGGT
GAGGCTGCCA AGACCACCTA TACCTTGGGC TATCATGTGA ACGCCTTCGC CGGCCTGGAG
GCCTGCAAGG CCCGCAGCAG TGTCTGTCAG ATCCCAAAGC TGACACAAGT CTTACCCATA
CACCATCAAT GTTCAGATAG CCTATATATC CTGGCGCAAG ATCTCACCCC TAATGAGCTG
AGTAGCAGCT GCACTAAGCT CACCTCACAG GAGGCCAACT TTCATCGACT GCTCGAGACT
CAGCACCAGC CGACCGCCAA CGACAACAAT GATGCGCTGC AGGTAGTGGC CTTCAAGAAT
TGGAGCCAAT ACAACGCCTA CGGCCAGCTG CTGTTCGACA TAGGCACGGA TAACGGCGGC
ATGTATATCG AAGGCACGCC GTCAAATCCC GAAAATCAGG CCAGCTTCTT CGCCTATCGA
CAGTTTTGGA TCGCGCCCGA GTTTGCCATC TGGAACCTGA ATCATGAATA TGTGCACTAT
CTCGACGGCC GCTTCGTGAA ATATGGCGGC TTCGGCCATT TCCCGCGCAA GCTGGTGTGG
TGGTCGGAAG GGCTGGCCGA GTACGTCTCC AAGGGCAATG ACAATCCATC GACCCTGAAG
GTCATCAAGG CTAAACTGGG CGAGGCGCCG GATCTCAAGA CCATCTTCGC CACCGAATAT
AAGGATGGCC TCGACAGAAC CTATAAGTGG AGTTACATGG CCATCCGCTT CCTGGCCGAG
CACCACCCAG AGGAGTTGGT GCGTCTCAGC CATTACCTGA AGACAGATTA TTTCGAGGGC
TATGAGAAGC TGCTCGATCA ACTCTCAGAG CAGCAAAGTG CCTTTTCAAA CTGGCTAACC
CAGCAGGTTG CCCAATTTGA GGAGCATGAC ACGGATAAGG CGCCCAAGAT AAACAAGCTT
AATCGTTACG CCTATCGCGA TTATCTGATG CCAAGCCACC TCAAGTTAGA TGGGGCCCAT
CAACATTTTT AA
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| Protein sequence | MLRQSLCALL LVGPSFLVGC SVTAPGQITP TPRQIDSIFI NELSALPSQQ LFSHDNPLLD
TASLTKALQA IMQAQDEASL DALLYYLRAF SYFGPMDKLT DTEYTALTDA LSRLGNSQLI
AQAPRIQEHF AVTLYRYYGI DDKDDKVNDQ RAQQLASLLP LLNRQLKRTA KQAPSQAADY
ALWETLRAYG MLLNIARKQP DRALNKQLIA AELDKPLLDF AASALSLHGQ QDWPRANAYW
ALGLYRLALP SGEEGKLTPA EQALDDAMVR LAEQDVAQRG EAAKTTYTLG YHVNAFAGLE
ACKARSSVCQ IPKLTQVLPI HHQCSDSLYI LAQDLTPNEL SSSCTKLTSQ EANFHRLLET
QHQPTANDNN DALQVVAFKN WSQYNAYGQL LFDIGTDNGG MYIEGTPSNP ENQASFFAYR
QFWIAPEFAI WNLNHEYVHY LDGRFVKYGG FGHFPRKLVW WSEGLAEYVS KGNDNPSTLK
VIKAKLGEAP DLKTIFATEY KDGLDRTYKW SYMAIRFLAE HHPEELVRLS HYLKTDYFEG
YEKLLDQLSE QQSAFSNWLT QQVAQFEEHD TDKAPKINKL NRYAYRDYLM PSHLKLDGAH
QHF
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