Gene Shew_3727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3727 
SymbolaroE 
ID4921021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4441164 
End bp4442078 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content58% 
IMG OID640165353 
Productshikimate 5-dehydrogenase 
Protein accessionYP_001095852 
Protein GI127514655 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.114545 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00916884 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGGCAC CCTTTGCTTC ACCGAAAAAG CTCAGTAGAC TGAGCGCAAT CGAATCAAAT 
AGAGACCATA TCCCCATGAC GCAGCAGGTG CAAGATAGAT ACGCCGTATT TGGCCATCCC
ATAGGGCATA GCAAATCCCC GGCTATTCAT CAGGCGTTCG CCAAGTCGAC GGGCGAGTCG
CTGCAATATG AAGCCATCTT GGCGCCCCTC GATGGTTTCG CCGAGTCTCT GCGAGCTTTC
TTCGAACATG GCGGCAAGGG GGCCAACGTG ACCCTGCCGT TCAAAGAGCA GGCCTACGCC
TTGTGTGATT GCCTGGGTGA TGAGGCCAAG CTTGCCGGCG CCGTCAACAC CCTCACTCGC
CTGGCCGATG GCCGCATCAA GGGCGACAAT ACCGATGGCT TAGGGCTGGT GGCGGATCTC
GAGCGTCACC TTGGTAGCCT GTGCGGTAAG AGTGTCTTGC TCATCGGCGC AGGTGGTGCG
GCGCGCGGCG CCATATTGCC GCTGCTGAAT GCCGGTATCG ACTCTTTGAC AATACATAAC
CGTACCCATA GCAAGGCGGA GCAACTGGCC GAGGCATTTA AGGCCTATGG TCAGGTGAAG
GCCAGCACCT TGGATGAACT GACCCACAGC TTCGATATTG TGATCAACTC AACCTCAGCC
AGTTTGAGTG GCGAGCTGCC GAGTCTGCCC AAGGCGATTA TCGCCGCCCA TAGCGTCTGC
TACGATATGA TGTATGGCCG AGAGCTCACC GCCTTTAATC ACTGGGCCTT AGACCAGGGG
GCGAGTCAGA CGATCGATGG CCTGGGCATG CTGGTGGGAC AGGCTGCTAA GAGCTTCGCT
ATTTGGCGCG GTGTAGAGCC CGCTGTCGAG CCAGTATTGG CAAAGCTGCG TAGTGAGCTC
GCATCGCAGG CGTGA
 
Protein sequence
MLAPFASPKK LSRLSAIESN RDHIPMTQQV QDRYAVFGHP IGHSKSPAIH QAFAKSTGES 
LQYEAILAPL DGFAESLRAF FEHGGKGANV TLPFKEQAYA LCDCLGDEAK LAGAVNTLTR
LADGRIKGDN TDGLGLVADL ERHLGSLCGK SVLLIGAGGA ARGAILPLLN AGIDSLTIHN
RTHSKAEQLA EAFKAYGQVK ASTLDELTHS FDIVINSTSA SLSGELPSLP KAIIAAHSVC
YDMMYGRELT AFNHWALDQG ASQTIDGLGM LVGQAAKSFA IWRGVEPAVE PVLAKLRSEL
ASQA