| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3724 |
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| Symbol | |
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| ID | 4921081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4431654 |
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| End bp | 4434146 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165346 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001095849 |
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| Protein GI | 127514652 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.153099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGAAAT TTTTCTCACG TCCCTCGCTC ATTCTCTTCG CACCTCTGGT GTGTGTCTTG
CTGTTTGCGT TTTTTATTAC CAGTAGCTAC TTTGTCGAGC GTCAGCAACG TCGAGATTAT
GTGTCCGCCT CCCAGGTAGA GCACCTGTCT CAGGGATTGA TGCGAATGAA TCACCTGGTA
GCGATGGCGG CCAAGGCGCA AGACTTCACG CGGGTAGAGG AGGAACTGGC CCTGCTCGGC
AGCGATATTC GTCTTTCCGT GTATACGCTT ATCGATCGCA GGGGTAACAT ACGCTTTGCC
AATCATGGGG TATGGCGTGA CAGCTCGGCG CAGTTAGTGA TCGATGGTTA CGAGAGCCAG
GCCCACGAAA ACAGCGTCGC CGAGGGCAGA TCTCGCATCT ACTTCAATGA TAAGCGTCAG
TCGATCCAAG CCTATTATCC TATCACCCCA CAGCTCTCCT CTCTGTCGGT CGAACGTCCC
GAACTCATCT ATCTCGAATA TGATATGGCG CCCATGCTGG CCGCTAGCGA TGAAACCGTT
TTAGTAGGCC TGATGCGAAC CGGTGCGATT GCCTTGGCGA CCACCTTAGT CTTGCTCGGC
CTGTTTTACT ATTTCGTGTT GTCGCCGATT CGCTACCTGA GTCGCCAGGC GGCGGCTCTG
GGCCAGCGTG AAACCGATTC CAGGCAAAAG CCGATCGAGT CTCCCTTCAT TGAATTGCAT
AGCCTAGAGC AGAATCTTAG GCGCTTTAAG GATAGGTTCC AGCAGGGGGC GAAACAGCTT
AAGGATAGCG AGCAGAGATG GCTGTTTGCC GTAGAGGTCT CACGTTACGG TATCTGGGAC
TGGAACCTGG AGGACAATAG CGTATTTCTC TCCGACCGCT GGAAGGATAT GTTGGGCTAC
GGGCCTGAAG ACTTAGTGCC CGAGCTGGCA ACCTGGGAGA GCCGGCTGCA CCCCGAGGAC
AAAGAGGGGA TACTCAAAAA CCTTAACGCT TACCTCAATG GGGAAACCGA GGAGTTTGAG
AGCGTGCATC GACTGCGTCA TCAGCAGGGG CATTACATCT GGGTGCTCGA CAGGGGGATG
ACGGTCGAGT GGAACGAGAA GGGTAAACCG CTACGCATGA TAGGCACGCT GTCCGATGTG
ACAGAGGATA TTCGTAACCA GAAGGCGGCG ATGCATCAGG CCAAGCACGA CCCGCTCACG
GATCTCGCCA ATCGCCGCGC CTTGATGGAC GCCCTGTATC AGCAGCAGGA TGAGTCGGGA
AGCTGCACGG CCTTGTTTAT GCTGGACCTG GATAACTTTA AGGTGGTCAA CGATGCCCTC
GGGCATCATG GTGGCGACAG ACTGCTGATC CAGATTGCTG CCAGGTTATC CAGCTACTTC
TCCTCTAACT CGCTGATCGC CCGTGTGGCC GCCGATGAGT TTGTGGTTCT AGTGAAGAAG
TTACCGGAAG ATCTCCTCGG TGCCCAGCGT CGTGCACAGG CCCTGGCGAG TCAGATGCGT
CAGCTGATCG CCCGCAGCTT CCATATCAGT GGCCATACCT TTAATCTCTC CGCCAGTGTG
GGGATCGCCA TCATCGATCC AAGCGAGACG ATCCCGCCGG AGCAACAATT AAAACGGGTC
AATATGGCGC TGGCTCAGGC GAAGGAGAGT GGACGCGATG CCTGTGTGGT CTATAGCAGC
GAGATGGATA AGCGTGCCGC GCAGAATCTG ATGATCCGCA CCGAGCTGGT GCATGCCGTT
ACGCGTCATC AGTTGTCTCT CTTCTATCAG CCGCTGCTAA ACGCCAAGGG CGAGATTGCC
TCGGTCGAGG CCTTGCTGCG CTGGCACCAT CCACAGCATG GGGCTATTTC GCCGGCCGAC
TTTATCCCTG TGGCCGAGGG TAGCGCCCTG ATTGTCGAAC TGGGTGAGTG GGTGTTGCTG
GAGGCTTGCC GTTTCATTCG TGGGTTACAG GAACAAGGTA TTCGCCCACC TATGGTCTCG
ATCAATGTCA GCGCGCGTCA GTTCCACCAG GATGAGTTTG CACCTAAGCT ACTGGTCATG
CTAAAGGATC AAGGGATCAG CCCTGCCCAT ATCGAACTCG AGCTTACCGA GCATGTGTTA
TTGACTGACC TGCAGCAGGT GCGCCAAACC ATGACGCAAT TGAGAGAGGC AGGGGTCAGC
ATCGCCGTGG ATGATTTCGG CACGGGTTAT AGCTCGCTGA GTTATCTGCA GGAGCTACCG
TTGAATCGCC TCAAGCTAGA TGCCAGCTTT ATCAGAGACA TGGGTAATGG CGATGCCTCT
GCCTCTATCG TCAAGGCCAT GATCGATATG TCTCACAGCC TGAATCTCGA GTTTGTTGCC
GAGGGCGTCG AGATCCAGTC TCAGTTCGAG CAGCTCAAGG CCTATCGCTG CGATCTATAC
CAAGGTTATC TATTCCACCG TCCTATGCCG GGCGAAGAGT TGGCTCGTCT GCTGGTAAGG
CTCGGAGACA GGCCACTGTT ATCAAGCGTG TAG
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| Protein sequence | MLKFFSRPSL ILFAPLVCVL LFAFFITSSY FVERQQRRDY VSASQVEHLS QGLMRMNHLV
AMAAKAQDFT RVEEELALLG SDIRLSVYTL IDRRGNIRFA NHGVWRDSSA QLVIDGYESQ
AHENSVAEGR SRIYFNDKRQ SIQAYYPITP QLSSLSVERP ELIYLEYDMA PMLAASDETV
LVGLMRTGAI ALATTLVLLG LFYYFVLSPI RYLSRQAAAL GQRETDSRQK PIESPFIELH
SLEQNLRRFK DRFQQGAKQL KDSEQRWLFA VEVSRYGIWD WNLEDNSVFL SDRWKDMLGY
GPEDLVPELA TWESRLHPED KEGILKNLNA YLNGETEEFE SVHRLRHQQG HYIWVLDRGM
TVEWNEKGKP LRMIGTLSDV TEDIRNQKAA MHQAKHDPLT DLANRRALMD ALYQQQDESG
SCTALFMLDL DNFKVVNDAL GHHGGDRLLI QIAARLSSYF SSNSLIARVA ADEFVVLVKK
LPEDLLGAQR RAQALASQMR QLIARSFHIS GHTFNLSASV GIAIIDPSET IPPEQQLKRV
NMALAQAKES GRDACVVYSS EMDKRAAQNL MIRTELVHAV TRHQLSLFYQ PLLNAKGEIA
SVEALLRWHH PQHGAISPAD FIPVAEGSAL IVELGEWVLL EACRFIRGLQ EQGIRPPMVS
INVSARQFHQ DEFAPKLLVM LKDQGISPAH IELELTEHVL LTDLQQVRQT MTQLREAGVS
IAVDDFGTGY SSLSYLQELP LNRLKLDASF IRDMGNGDAS ASIVKAMIDM SHSLNLEFVA
EGVEIQSQFE QLKAYRCDLY QGYLFHRPMP GEELARLLVR LGDRPLLSSV
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