| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3712 |
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| Symbol | |
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| ID | 4921069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4416377 |
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| End bp | 4417213 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165334 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001095837 |
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| Protein GI | 127514640 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00085785 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGAAC TTGGTCGTCT CCCCAATGAG CGCGCCGCCC AGGCGCTGAT CGATTACCTC
AAGGGCCAGG GCATAGATTG CCAGCTGCAA CATGCCGAAC ACGGGGTGAT CCTCTATGTC
GCCCGAGAGC AAGACTACGC CAAGGCGCGC CGCGAATATG AGCACTTCGT GCGCAACCCC
TATGACGACA AGTACCTTCA GGCTTCCTGG GAAAACGGCA GTACAGGCAC CAAGTTAGAC
TATGGCGCGC CTGGACTGCA GCTGATGACT CAGTTCCTGT CCGGGGCCGG CCCCCTGACC
CTTATCGTCA TGCTCAGCTG CACGCTAATC TATCTCGGCT TCATTTTCGG CTTCGCCAAT
CCTATCTTCG AGGCACTCTC CTTCTTCGCT GCCGTACCCG GGAGCGACAC CAGTCAGATC
TGGCGCGTAT TTACCCCGAG CCTGATGCAC TTCTCCGCCA TGCATATCAT CTTCAACCTG
CTCTGGTGGT GGTATCTGGG GGGCAAGATA GAGAACAAGC TAGGGGTGAC TCCACTTTTA
ACCTTACTGC TGATCGCCGG CACCCTGCCG AACCTGCTGC AATATGCCAT AGGTGGTCCC
AACTTCGGCG GCCTGTCGGG TGTGGTCTAT GCGGTTGTGG GTTACACCTG GATCATGGGA
GTCAGACGTC CCGAGAAGGG GATAGGCCTG CCACCTGCCT ACATAGGCTT CATGTTGGTC
TGGCTGGTGT TTGGCTTTAC CGATATGTTC GGCCTATCCA TTGCCAACGG CGCCCATGTC
GGCGGCTTAA TGGTGGGCCT GGCCCAAGGC TTTATCGACA GTCGTCGACG GGTTTAA
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| Protein sequence | MLELGRLPNE RAAQALIDYL KGQGIDCQLQ HAEHGVILYV AREQDYAKAR REYEHFVRNP
YDDKYLQASW ENGSTGTKLD YGAPGLQLMT QFLSGAGPLT LIVMLSCTLI YLGFIFGFAN
PIFEALSFFA AVPGSDTSQI WRVFTPSLMH FSAMHIIFNL LWWWYLGGKI ENKLGVTPLL
TLLLIAGTLP NLLQYAIGGP NFGGLSGVVY AVVGYTWIMG VRRPEKGIGL PPAYIGFMLV
WLVFGFTDMF GLSIANGAHV GGLMVGLAQG FIDSRRRV
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