| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3710 |
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| Symbol | tdh |
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| ID | 4921222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4414940 |
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| End bp | 4415965 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165332 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_001095835 |
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| Protein GI | 127514638 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.187743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT TAAGCAAACT CAAGCCTGAA GAAGGCATCT GGATGGTTGA TGCGCCAAAA
CCTGAAGTTG GCCACAACGA TCTGCTGATC AAAATACGTA AGACCGCCAT CTGCGGTACC
GACGTGCATA TCTACAACTG GGATGAGTGG TCACAAAACA CCATTCCAGT GCCTATGGTA
GTCGGCCACG AATATGTGGG CGAAGTGGTC GAGATTGGTC AGGAAGTCCG TGGCTTCCAG
ATTGGCGATC GCGTCTCTGG CGAAGGTCAT ATCACCTGTG GCCACTGCCG CAATTGCCGC
GCGGGCCGCA CTCACCTGTG CCGCAATACC TCTGGTGTGG GTGTTAACCG CGAAGGTGCC
TTTGCCGAAT ACCTGGTGAT CCCTGCCTTC AACGCCTTCA AGATCCCTGA CGATATCTCT
GACGATCTGG CTTCTATTTT CGATCCTTTC GGTAACGCGG TGCACACGGC ACTGTCGTTC
GACTTGGTCG GCGAAGATGT GCTGATCACA GGTGCAGGCC CTATCGGCAT CATGGCCGCC
GCAGTTTGTC GCCATGTCGG CGCACGCCAC GTGGTGATCA CAGACGTGAA CGAATACCGC
CTCGAGCTGG CCAAGAAGAT GGGCGCCACC CGCGCCGTTA ACGTGGCCAA GGAGAAGCTG
GAAGATGTGA TGCAAGATCT CGGCATGACT GAAGGCTTCG ATGTGGGCCT TGAGATGTCG
GGCGTGCCAG CAGCCTTCCA CTCCATGCTG GATACCATGA ACCACGGCGG TAAGATCGCC
ATGCTGGGTA TTCCTGGCGG CGACATGGCC ATCGACTGGA GCAAGGTGAT CTTCAAGGGA
CTCATCATCA AAGGGATCTA CGGCCGTGAG ATGTTTGAAA CCTGGTACAA GATGGCCAGC
CTGATCCAAT CGGGTCTGGA TATCTCGCCA ATCATCACAC ATCACTACAA TGTCGATGAT
TTCCAAGCCG GTTTCGACGC CATGCGCTCG GGCCAATCGG GCAAGGTGAT CCTCAGCTGG
GATTAA
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| Protein sequence | MKALSKLKPE EGIWMVDAPK PEVGHNDLLI KIRKTAICGT DVHIYNWDEW SQNTIPVPMV
VGHEYVGEVV EIGQEVRGFQ IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGA
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELAKKMGAT RAVNVAKEKL EDVMQDLGMT EGFDVGLEMS
GVPAAFHSML DTMNHGGKIA MLGIPGGDMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYNVDD FQAGFDAMRS GQSGKVILSW D
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