| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3706 |
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| Symbol | |
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| ID | 4921218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4410362 |
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| End bp | 4411087 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640165328 |
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| Product | 3-deoxy-D-manno-octulosonic-acid kinase |
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| Protein accession | YP_001095831 |
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| Protein GI | 127514634 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0043809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATAA AACCTACCGA TGCAGGTTGC ATCGTCTTTA GCCAAGCTTC GCTCAAGGCG
ATCACCCCAG ATTGGTTTAC CTTCGATTAC TGGCAAGACC TAGGGGCCAT CACAGGCTCT
TCAAAGGGCC GCTACACCAC CTGGTTTGTC AATCCAGCTC CTCTGAGTCA GGCGCCCGAG
GAGGAGTGGG TACTCAGACA CTATTATCGT GGCGGCATGA TGGAGAAGTT CAGCCGCGAT
GCCTATCTCT ATACCGGGCT TAAGCGTTGC CGGGCGATCG CCGAATTCAA TTTATTGGAG
CAGCTGTTTA AGGAAGGATT TGCGGTGCCG GAACCTGTGG CGGCGCAGAT CCAGCGCAGC
GGCCCCTATT ATCGCGGCGA TATCATCATC AAGCGGATCC CGGGGGCTCG CGATCTGGTG
GCCGAGCTAA GCCAGGGACC TATGTCGGAT GAAAAATGGC AGGCGCTCGG TGCCTGTATC
GCCAAGTTCC ATCGCCGCGG CGTCTACCAC GCCGATCTCA ATGCCAAGAA CATACTGCTG
GCCGGAGAGA ACTTTACCCT GATCGATTTC GACCGCGGCG AGTTGAAGCA GCCTGACAGC
AAGTGGCAAC AGTCCAATCT GGATCGCCTG CTCCGCTCCT TCAACAAGGA GAAGGGCAAG
GCGCCCGAAC TGCACTTTAG CCAGGAAAAC TGGCAGCTTC TATTAGCGGG CTACGCCCAG
GCCTAG
|
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| Protein sequence | MQIKPTDAGC IVFSQASLKA ITPDWFTFDY WQDLGAITGS SKGRYTTWFV NPAPLSQAPE
EEWVLRHYYR GGMMEKFSRD AYLYTGLKRC RAIAEFNLLE QLFKEGFAVP EPVAAQIQRS
GPYYRGDIII KRIPGARDLV AELSQGPMSD EKWQALGACI AKFHRRGVYH ADLNAKNILL
AGENFTLIDF DRGELKQPDS KWQQSNLDRL LRSFNKEKGK APELHFSQEN WQLLLAGYAQ
A
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