| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3685 |
|---|
| Symbol | |
|---|
| ID | 4921609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4389345 |
|---|
| End bp | 4390061 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640165307 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001095810 |
|---|
| Protein GI | 127514613 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAAGA TCATCGCCAA CAACATAGAG ATGCGTTTCG GCAGCCGCCT GCTGTACCGT
TTCGATCGCC TCAGCCTAGC TCAGCACCAG ACCATACACC TGCAGGGCGA CAACGGCAGC
GGCAAAACCA CACTGATGAA GATGCTGGCA GGCCTGCAGG CGCCAAGTAG TGGCGAGATC
CACACAGAAG GTTTCGCCCC CAATCCATGG TGGCGCCGCA ACCCTTTGCT GGGCAAGGCG
GTCTATCTGC ATCAACACCC CTATCTGTTT GACGGCAGCG TGGCCTACAA CCTCAACTAT
GTGCAGCCCC TTTGCGACAT GACGGAGCAG GAGATCGCCT CGCGTACCCA GACGGCTATC
GAGATGGCCC AGCTGGGCAG CCTGCTCAAC CAGAGAGCCG CCAGCCTCTC CGGCGGCGAG
CGCCAACGTC TTGCCATCGC CCGCGCCTGG ATCATGCGTC CACGCCTGCT GATGCTGGAC
GAACCTACCT CCAACATGGA CAAGCTGTCC CAGCAGCTGG TACTGACCAT GGTCAGCCAC
CTGAAACAAC AAGGCACAGG CATGCTGATC AGCAGCCATC AAAGCTGTTC ACTCACCGGC
CTGTGCGAGC AGACCTGGCA GATCCAGGCA CAAGCAATTC AGGTAAGCCC GTCGACTCTC
GATGAGCGCC CCTTCACCCC ATCACAGCAG GAGCTGAGAT ATGTCACCGC AAATTGA
|
|---|
| Protein sequence | MVKIIANNIE MRFGSRLLYR FDRLSLAQHQ TIHLQGDNGS GKTTLMKMLA GLQAPSSGEI
HTEGFAPNPW WRRNPLLGKA VYLHQHPYLF DGSVAYNLNY VQPLCDMTEQ EIASRTQTAI
EMAQLGSLLN QRAASLSGGE RQRLAIARAW IMRPRLLMLD EPTSNMDKLS QQLVLTMVSH
LKQQGTGMLI SSHQSCSLTG LCEQTWQIQA QAIQVSPSTL DERPFTPSQQ ELRYVTAN
|
|---|
| |