Gene Shew_3659 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3659 
Symbol 
ID4921881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp4360773 
End bp4361315 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content58% 
IMG OID640165281 
Producthypothetical protein 
Protein accessionYP_001095784 
Protein GI127514587 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.694954 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.701609 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGGCC ACTATCGAAC GCTTACCTAT TTCACCTTAA ACGCTATCGC ACTCTCGCTG 
CTATTTATCT GTGCCGCTCA GGCCCAAGAT AAAGACGCGC CGCTAAACTC TAAGGCGATA 
GCTTCCGAGA CGATCACCCT GCCCGCCGAC GGCGCCCTGG ACAGCGAAGG TAATCCACTC 
CTCATCCCTG ACAACCCAAC CGGCGCCCTT AACTATCGCG CCAGCCCTAC GCAGCCCAAG 
TCGCGCCGGG ATAAGAGAGC CACCCAAAAG CCCAAACAGA AACGCACTAA GAAACTAAGT 
CAAAAACAGC TAAGCCGTAA ACAGCAGCTG GCCAGTCGCC AGCATGTGGC CGACGACCCC 
AGCTGCCGTT GGCTCGACAA GCGTATGTCG CATCTGGAGA AGAGCCTCAA GCGGCAAGCG 
AAACAAGATT ACGGCTATCA GGACGAGGAG CTACGCGCCC GCCAGAGCGA ATGGGTCTGC 
ATGAAATGCG GCGCCGAGGG GCCAAGCCAG AGCGATCACC ACAAGTGCCA GTACCGGCGC 
TAA
 
Protein sequence
MSGHYRTLTY FTLNAIALSL LFICAAQAQD KDAPLNSKAI ASETITLPAD GALDSEGNPL 
LIPDNPTGAL NYRASPTQPK SRRDKRATQK PKQKRTKKLS QKQLSRKQQL ASRQHVADDP 
SCRWLDKRMS HLEKSLKRQA KQDYGYQDEE LRARQSEWVC MKCGAEGPSQ SDHHKCQYRR