| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3657 |
|---|
| Symbol | |
|---|
| ID | 4921879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4357510 |
|---|
| End bp | 4359549 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640165279 |
|---|
| Product | oligopeptidase A |
|---|
| Protein accession | YP_001095782 |
|---|
| Protein GI | 127514585 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.601769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACC CTTTGCTAAG CGGCAGTGAA TTACCGCCAT TTTCGCAAAT CAAACCCGAG
CATATTCAGC CAGCCGTCGA GCAGGGGATT GCTAATTGTC GCCAGAAGAT CGATGAGGTG
CTCGCCAGTG GCGGTCCCTA CACCTGGGAT AACCTGATCG CACCGCTCGA GCAGGTGGAT
GACGAATTGA GCCAGATCTG GTCGCCCGTG TCGCACATGA ACTCTGTGCT CAGCACTGAT
GAGTGGCGCG CCGCCCACGA TGCCTGCCTG CCGCTCTTGT CGGAATATGG CACCTATGTG
GGTCAGCATC AGGGGCTGTA TCAGGCCTAT AAGGCGCTGA AGGAGTCCGA CGAGTTTGCC
CAGCTAAGTC AGGCGCAGCA AACCAGCATC ACCCACAGCC TGCGTGATTT CGAGTTATCT
GGTATCGGAT TAAACGATGA AGATAAACAA ACTTATGGAA AACTGGTTAA ACGTTTATCT
GAGTTAACCA GTAGCTTCTC TAATCAGCTG TTGGACGCCA CCCAGGCCTG GACCAAGTTG
GTGACCGATG AGCAGGAGCT GGCAGGCTTG CCCGAGTCTG CCATTGCCGC AGCCAAGGCG
ATGGCCGAGG CCAAAGAGCA GCAAGGTTGG TTGTTTACCC TGGACTTCCC CTCTTACCTA
CCCGTGATGA CCTACAGCGA CAACCGTCAG CTGCGGGAGG AGTGCTACCG CGCCTTCGTG
ACCCGCGCCT CGGATCAGGG CCCTAACGCA GGTGAGTTCG ACAACGGTCC GCTGATGGAT
GAGATCTTAG ATCTGCGTCA TCAGCTGGCT AAACTGCTGG GCTTCGACAG CTTCGCCCAC
AAGTCGCTGG CGACCAAGAT GGCCGAGTCG CCTCAGCAGG TGCTGGATTT CCTTAACGAG
TTGGCGGCCC GCTCTAAACA GCAGGGACAG AATGAGCTTG CCGAGCTGAC CGCGTTCGCC
GAGAAAGAGT TTGGCGTTAT CGAGCTGGCC CCATGGGATC TCACTTATTA TGCCGAGAAA
CTCAAGCATC ACAGATACGA GATCTCCCAG GAGCTGCTGC GTCCTTACTT CCCTGAAGAT
CGTGTGCTGT CAGGCCTCTT CTATACCGTG TCGCGCCTGT TCGGTCTGAC CATAGAGGAG
CAGGAACATT TCGACAGCTG GCACAAAGAT GTGCGCTTCT TCCATATCAA AGATGCCAAG
GGCGAGCACA GAGGCAGTTT CTTCCTGGAT CTCTATGCTC GCGAGGGCAA GCGTGGTGGC
GCCTGGATGG ACGATTGCCG CGTGCGTCGT CAAACCGCCC ATGGCCTGCA GAAGCCGGTG
GCCTACCTCA CCTGTAATTT CAATGCCCCG GTCAATGGTA AGCCTGCGCT GTTTACCCAC
GACGAGGTGA CGACTCTATT CCACGAATTC GGTCACGGTA TACATCATAT GCTGACCAAG
ATAGACGTGG CGGGCGTATC AGGTATCAAT GGTGTGCCTT GGGATGCGGT GGAGCTGCCG
AGTCAGTTCA TGGAAAACTG GTGCTTCGAG GAGGAAGCCC TGGCCGAGAT CTCCGGACAC
TTCGAGACCC ATGAGCCATT GCCGAAGGCC ATGCTAGACA AGATGCTGGC GGCGAAGAAC
TTTCAGTCAG GCATGATGAT GTTGCGTCAG CTGGAGTTTT CGCTGTTCGA CTTCCGCCTG
CACCTGGAAT ATGACCCGGC AGAGGGCGCC CATATTCAGG CCAAGTTGGA TGAGGTGAGA
GATCAGGTTG CCGTGGTGAA GGCCGCCGAT TTCAACCGTT TCCAACACAG CTTCGCCCAT
ATCTTTGCCG GTGGTTACGC CGCGGGTTAC TACAGCTACA AGTGGGCCGA GGTGTTGTCG
GCCGATGCCT TCTCGCGCTT TGAGGAAGAG GGGATCTTCA ACGCCGATAC CGGTCGCAGC
TTCCTGGAGA ACATTCTCGA GATGGGTGGC AGCCTGGAGC CGATGGAGCT GTTTAAGCGC
TTCAGAGGCC GTGAGCCAGA GATCGACGCC CTGCTGAGAC ACTCGGGCAT TCAAGGCTAA
|
|---|
| Protein sequence | MSNPLLSGSE LPPFSQIKPE HIQPAVEQGI ANCRQKIDEV LASGGPYTWD NLIAPLEQVD
DELSQIWSPV SHMNSVLSTD EWRAAHDACL PLLSEYGTYV GQHQGLYQAY KALKESDEFA
QLSQAQQTSI THSLRDFELS GIGLNDEDKQ TYGKLVKRLS ELTSSFSNQL LDATQAWTKL
VTDEQELAGL PESAIAAAKA MAEAKEQQGW LFTLDFPSYL PVMTYSDNRQ LREECYRAFV
TRASDQGPNA GEFDNGPLMD EILDLRHQLA KLLGFDSFAH KSLATKMAES PQQVLDFLNE
LAARSKQQGQ NELAELTAFA EKEFGVIELA PWDLTYYAEK LKHHRYEISQ ELLRPYFPED
RVLSGLFYTV SRLFGLTIEE QEHFDSWHKD VRFFHIKDAK GEHRGSFFLD LYAREGKRGG
AWMDDCRVRR QTAHGLQKPV AYLTCNFNAP VNGKPALFTH DEVTTLFHEF GHGIHHMLTK
IDVAGVSGIN GVPWDAVELP SQFMENWCFE EEALAEISGH FETHEPLPKA MLDKMLAAKN
FQSGMMMLRQ LEFSLFDFRL HLEYDPAEGA HIQAKLDEVR DQVAVVKAAD FNRFQHSFAH
IFAGGYAAGY YSYKWAEVLS ADAFSRFEEE GIFNADTGRS FLENILEMGG SLEPMELFKR
FRGREPEIDA LLRHSGIQG
|
|---|
| |