| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3617 |
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| Symbol | |
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| ID | 4922403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4313041 |
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| End bp | 4314261 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165239 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_001095742 |
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| Protein GI | 127514545 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCAT TTGAGTACAA GGCGTTAAAC GCCCAGGGCA AACAGCAGAA AGGGGTTGTC
GAGGCCGACA CGGCTCGTCA TGCCAGGGGG CAACTGCGCG AGCTGCGTCT GATGCCGCTG
GAGATCACCC CAGTGGTCGA GAAGGAAGCC AAGGCAAAGA GCGGTGGTTT CAGCTTCAAG
CGCGGCATCT CGGTCGCCGA GCTGGCACTG ATCACCCGGC AGATCGCCAC CCTGGTGGCC
GCCGGCCTGC CGGTGGAAGA GGCCCTCAAG GCCGTGGGGC AACAGTGTGA AAAGGATCGT
CTCGCCAGCA TGGTGATGGC GGTGCGCTCT CGCGTTGTCG AGGGTTACAG CCTGGCCGAT
TCCATGGCCG AATTTCCCCA TATCTTCGAC GATCTCTACC GGGCCATGGT TGCCTCGGGT
GAGAAATCGG GCCATCTCGA GGTGGTGCTC AACCGCCTCG CCGACTATAC CGAGCGTCGT
CAGCAGTTAA AGACCAAGAT GACCCAGGCG ATGATCTATC CCATCGTTTT GACCCTGGTC
GCCATCAGTG TGATCGCCAT CCTGCTGGCC GCCGTGGTGC CTCAGGTGGT GGGTCAGTTC
GAGCATATGG GCCAGGAACT GCCCTGGACG ACACAGTTTT TGATCGCCTC ATCGGATTTT
GTTCGCGACT ATGGCCTGAT CGTCATAGGC GTCATCATCG CCTTAGTGGT GGGTGCCAAG
CAGCTGCTGC GCAGCGCGGC CAACCGGATG AAGTACGATA GCGCAATATT AAAGATGCCG
GTTGTCGGCC GGGTAAGTAA GGGCTTGAAT ACGGCGCGTT TTGCACGCAC CCTGAGTATC
CTTACTGCCA GTTCGGTTCC TCTGCTCGAT GCCATGCGTA TCGCCAGCGA GGTCTTGATG
AATGTCCGGG TACGGGCGGC GGTCGAGGAG GCCACGGCCA GGGTACGTGA AGGGACTAGC
CTAGGCGCGG CGCTTGCCAA TACTAAACTT TTTCCCCCAA TGATGCTCTA TATGATCACC
TCGGGTGAAA AGAGTGGTCA GCTGGAGCAG ATGCTTGAGC GCGCCGCCGA CAACCAAGAC
AGAGAATTTG AGTCTAACGT CAACATCGCC CTTGGGGTGT TCGAGCCCAT GCTGGTGGTC
AGCATGGCGG CCGTGGTGCT GTTTATCGTC CTGGCGATTC TGCAGCCGAT CTTAGAACTC
AACAACATGA TTAGTGGTTA A
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| Protein sequence | MPAFEYKALN AQGKQQKGVV EADTARHARG QLRELRLMPL EITPVVEKEA KAKSGGFSFK
RGISVAELAL ITRQIATLVA AGLPVEEALK AVGQQCEKDR LASMVMAVRS RVVEGYSLAD
SMAEFPHIFD DLYRAMVASG EKSGHLEVVL NRLADYTERR QQLKTKMTQA MIYPIVLTLV
AISVIAILLA AVVPQVVGQF EHMGQELPWT TQFLIASSDF VRDYGLIVIG VIIALVVGAK
QLLRSAANRM KYDSAILKMP VVGRVSKGLN TARFARTLSI LTASSVPLLD AMRIASEVLM
NVRVRAAVEE ATARVREGTS LGAALANTKL FPPMMLYMIT SGEKSGQLEQ MLERAADNQD
REFESNVNIA LGVFEPMLVV SMAAVVLFIV LAILQPILEL NNMISG
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