Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3613 |
Symbol | |
ID | 4922399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4310779 |
End bp | 4311558 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640165235 |
Product | general secretion pathway protein J |
Protein accession | YP_001095738 |
Protein GI | 127514541 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCTTAA GCAAGACTAA GCGGGCACAG GGCTTTACCC TGCTGGAGAT GCTGATCGCC ATCGCCATCT TTGCCATGCT GGGGTTGGCG GCGAATGCCG TGCTCAGCAC AGTAATGAAA AACGATGAGG TCACCGCCGA GTTTGCCCAG CGACTCAAGT CGTTGCAACA GGGCTTCGGT GCCCTGGAGC GGGATTTTGG CCAGATGGTG GCCCGTACTC CGCGTCTGTT AGAAGGCGGG CGTGGCTCGA CCGTGATTCA GACCGGCAAA GATCTGTTCG ATTCAGAGTC TGAGGCCATC GTCTTCTACC GTATCGGCTG GTTGAATCCT GACGGGCTCT TGCCCAGAGG CAGCCTGCAG TCGGTGGCCT ATGTGGTACA GGAAAACAAC CTGGAGCGTT GGTATTTTCC CTATCCCGAG CCGGAGTTTG GCGCCGAGCC GATTAAGACT GTGGTGATTA AAAATGTCCT CTCTGTGGAG TATTCCTTCT ATGTCGAGGA CAAATGGCAG CGTAAGTTTG ATGCCACTAG CCTGCCCAAG GCGATCGCCA TGGAAATTGA GGTGGAAGGC CTGGGTAAGG TACAGCGCAA GTTCCTGTTA CCTTTGGGCG CTATGCTGAG TGAAAATGGC TCGGGCAACA ATAACGGTAA TAACAACGGC AACAATAACG GCAATAACAA CGGCAGCAAT AACGGTAATA ACGGTGGCAA CAACTCCGGC GGCAACAGCG ACGGAGGTAA AGATGGCGGT TCCGGTGGCA AGGAAGATGA CGATGAATAG
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Protein sequence | MCLSKTKRAQ GFTLLEMLIA IAIFAMLGLA ANAVLSTVMK NDEVTAEFAQ RLKSLQQGFG ALERDFGQMV ARTPRLLEGG RGSTVIQTGK DLFDSESEAI VFYRIGWLNP DGLLPRGSLQ SVAYVVQENN LERWYFPYPE PEFGAEPIKT VVIKNVLSVE YSFYVEDKWQ RKFDATSLPK AIAMEIEVEG LGKVQRKFLL PLGAMLSENG SGNNNGNNNG NNNGNNNGSN NGNNGGNNSG GNSDGGKDGG SGGKEDDDE
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