| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3603 |
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| Symbol | |
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| ID | 4922508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4301446 |
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| End bp | 4302303 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640165225 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001095728 |
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| Protein GI | 127514531 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000309877 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAATC AAACGCAATC AATGGCACTA ATGGTACCTC AAAGCAGCAG TAGCTTAGAG
GCTTATATCC ATTCTGCGCA CAACATTCCT ATGTTGGAGG CGAATGAGGA GTATGAGCTG
GCGAAACGTC TGCAGGAGAC CGGTGACATT CAGGCTGCGA AGCAGTTGAT TATGTCTCAT
CTTCGTTTCG TTATTCATGT CGCCAAAGGT TACGCGGGTT ATGGTCTGCC ACAGGCGGAT
CTGATCCAGG AAGGTAACAT TGGTCTGATG AAGGCGGTAA AGCGCTTTGA TCCCGATGTG
GGTGTACGTC TTGTCTCGTT TGCCGTGCAT TGGATTAAAG CCGAGATCCA CGAATACGTG
CTGAAAAACT GGCGTATCGT TAAGGTCGCG ACCACCAAGG CGCAGCGTAA ACTGTTCTTC
AATCTGCGTA AGGCTAAGAA ACGTCTTGGC TGGTTCAGTG ATGAAGAGGT GACCATGGTT
GCCGAAAACC TGGGCGTCTC GAAGAGCGAC GTGACCGAGA TGGAATCACG CATGGCGGCG
CAGGATCCAG CCTTCGATCT GGCCAGCGAC AACGATGACG ATCAGGACTA TGCCCCTGTG
CATTACCTCG AGGATCATTC GTCTGATATC GCCTCTCAGG TCGAAAATGA CAACTTCGAA
GCCGATAACC AAACCCGTCT TCTGGCGGCC ATCAAGACCC TTGATGAGCG TAGTCAGCAT
ATTCTACAGG CGCGTTGGTT AGACGAAGAG AAGACCACGC TGCAAGAGCT GGCGGCCACC
TATCAAGTTT CTGCCGAGCG TATCAGGCAG CTTGAGAAGA ACGCCATGAA CAAGCTCAAG
GGCCGCATGG AAATGTAA
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| Protein sequence | MTNQTQSMAL MVPQSSSSLE AYIHSAHNIP MLEANEEYEL AKRLQETGDI QAAKQLIMSH
LRFVIHVAKG YAGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NLRKAKKRLG WFSDEEVTMV AENLGVSKSD VTEMESRMAA
QDPAFDLASD NDDDQDYAPV HYLEDHSSDI ASQVENDNFE ADNQTRLLAA IKTLDERSQH
ILQARWLDEE KTTLQELAAT YQVSAERIRQ LEKNAMNKLK GRMEM
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