Gene Shew_3576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3576 
Symbol 
ID4922649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp4273940 
End bp4274614 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content53% 
IMG OID640165198 
Productcysteine dioxygenase type I 
Protein accessionYP_001095701 
Protein GI127514504 
COG category[R] General function prediction only 
COG ID[COG5553] Predicted metal-dependent enzyme of the double-stranded beta helix superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTTA TCTGCTATCG ACCTATTGCC TATTTATTGC CTGGGGCGGA TCGCCTAGCC 
TTGATTGACG ACATTCAGGA CAAAGAGAGT GTGATGGAAA ACATTGGCAG ATTGCGGGAT 
TTTGTGCAGT CCTTCACTCG GCTGGTCGAG CAGGTCGGCT GCGATGAGGC GCGTATCTTT 
TCCGACGGCA AGTCGCTGCT GTCGGAGCTT ATTGCTCATG ATGACTGGCT ACCCCATGCC 
TTTGCTCAGC CGAGTATTGA GAGCTATCGG CAGTATCTGC TCTACTGCGA TCCAATGGAG 
CGTTTCTCTG TGGTGAGCTT CGTCTGGGCA CAGGGGCAGA TCACGCCTGT TCATGACCAT 
ACCGTATGGG GCATGGTGGG CGTACTGCGC GGCGCCGAGC GCTGTGAGGA ATATGAGCTG 
GACGAGGCTG CGGTTTGCTT GCGGGCCAGC GGTAGTCATG AGTTGCCCGT TGGCGGTGTC 
GATCTGGTCT CGCCCGATAT CGGCGATATC CATAGGGTTT CTAATGCTCT ATTGGAGGGA 
GTATCAATTA GCATTCATGT CTATGGCGGC AACATAGGTG CGGTGCAGCG CCATGTTTAT 
GACCCCGATA CCGGGAGTAA GAAGCCATTT ATATCTGGGT ATTCGAATAG TGTGATGCCG 
AATATATGGG GGTGA
 
Protein sequence
MAFICYRPIA YLLPGADRLA LIDDIQDKES VMENIGRLRD FVQSFTRLVE QVGCDEARIF 
SDGKSLLSEL IAHDDWLPHA FAQPSIESYR QYLLYCDPME RFSVVSFVWA QGQITPVHDH 
TVWGMVGVLR GAERCEEYEL DEAAVCLRAS GSHELPVGGV DLVSPDIGDI HRVSNALLEG 
VSISIHVYGG NIGAVQRHVY DPDTGSKKPF ISGYSNSVMP NIWG