| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3572 |
|---|
| Symbol | |
|---|
| ID | 4922645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4266250 |
|---|
| End bp | 4267230 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640165194 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_001095697 |
|---|
| Protein GI | 127514500 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02823] putative quinone oxidoreductase, YhdH/YhfP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGG CGCTCGTATT GACCCAGCTA GATAGACAGA CCCAAGCCGA TGTGAAACTG
CTGCCTGAGA GCGATCTGCC CGAGGGTGAG GTGCTGGTGG AGGTGAGTTA CTCATCGCTC
AACTATAAGG ATGGCCTGGC GATCACCGGC CTTGGCAAGA TCATTCGCGA GTTCCCCATG
GTGCCTGGTA TCGACTTCGC CGGTGTGGTG AGCGAGTCGG CCGACTCTCG TTTTCAGCCC
GGTGATGAGG TGATCCTGAC CGGCTGGGGC GTGGGTGAGA ACCATTGGGG CGGCATGGCC
GAGAAGGCGC GGGTGAAGGC CGACTGGCTG GTGCCCATGC CTAAGGGCTG CGACGGCGCC
AAGGCGATGA TGATAGGCAC GGCCGGCCTG ACCGCCATGC TATGTGTGCA GGCGCTGCAA
CAGGCCGGCG TCACCCCGGA GCAGGGTGAC GTCTTAGTGA CAGGTGCCAG CGGCGGCGTA
GGCTCGGTGG CTGTGACCTT GCTGGCTCAG CTAGGTTATA AGGTCGTTGC CAGCTCGGGC
CGGGTCGAGG TGAATGGCGA CTGGCTAAAA GCCCTGGGCG CCAGCGAGGT GATCGATCGC
AGCGAGCTTG AACAGGACAG CCGTCCGCTG GAGAAACAGC GCTGGGCGGG TGTGGTCGAT
ACCGTAGGCA ACAAGGTGCT GGCCACGGCA CTGGCGCAGA TGCAATATGG TGGCAGCGCC
GCCATCTGTG GTCTGGCGGG CGGTTTTGCC CTGCCAACGA CTGTGATGCC CTTTATTTTG
CGCGGCGTGA ACCTCTTGGG TATCGATTCT GTGGCTTGCC CCATCGACAA GCGCGTTAAG
GCCTGGCAGC AGGTGCTCGA TCTCCTACCC GAAAGCTACT ATCAGCAGGC CTGTCAGACC
ATAGGCCTGG AGCAATTGGG CGAGTACGCC AACAAGATAG TCAAAGGCAA GGTCACCGGC
CGGGTATTGG TTAAGGTGTA G
|
|---|
| Protein sequence | MFKALVLTQL DRQTQADVKL LPESDLPEGE VLVEVSYSSL NYKDGLAITG LGKIIREFPM
VPGIDFAGVV SESADSRFQP GDEVILTGWG VGENHWGGMA EKARVKADWL VPMPKGCDGA
KAMMIGTAGL TAMLCVQALQ QAGVTPEQGD VLVTGASGGV GSVAVTLLAQ LGYKVVASSG
RVEVNGDWLK ALGASEVIDR SELEQDSRPL EKQRWAGVVD TVGNKVLATA LAQMQYGGSA
AICGLAGGFA LPTTVMPFIL RGVNLLGIDS VACPIDKRVK AWQQVLDLLP ESYYQQACQT
IGLEQLGEYA NKIVKGKVTG RVLVKV
|
|---|
| |