| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3570 |
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| Symbol | |
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| ID | 4922643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4264116 |
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| End bp | 4264799 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165192 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001095695 |
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| Protein GI | 127514498 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000660562 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCAAA TTCTGTTAAT CGATGACGAT CTAGGGCTAG CGGAACTGCT AGCACAACTG
CTTGAACTTG AAGGGTTTAA CCTCACACTT GCCCACGATG GCGAGGCGGG GCTGGCCCTG
GCGCTGGAAC AGCAGTTCGA TCTCATCCTG CTCGATGTCA TGCTGCCCAA GCTCAACGGC
TTCGAGGTAC TCAAGGCATT GCGCTCCAAG AAACAGACTC CGGTACTCAT GCTCACCGCC
CGCGGCGACG AGATAGACAG GGTCGTTGGC CTGGAGATAG GCGCCGACGA CTACCTGCCC
AAGCCCTTCA ACGATCGCGA ACTAGTGGCG CGCATCAAGG CGATCATCCG CCGCACCAGC
CATCAGATGG ACGAACAGCA ACCCAGCATA CTGGAGTTTG CCGACATCAA GCTCGACCCC
AGCCGTCAGG AGGTGCTCTG CCAGGATCAG CTTTTGATCC TCACCGGCAC CGAATTTAGC
CTGCTGTATC ATATGATCCA GCACAGCGGC GAGGTGCTGA GCAAGGATAA CCTCAGCGAG
AATGTCCTGG GCAAGAAGCT GATGCCCTTC GATCGCAGCC TGGATATGCA CTTGTCTAAT
CTGCGTAAGA AACTGCCCGA ACGCGCCGAC GGCCGCCCAA GGGTCAAGAC CCTCAGAGGC
AAGGGCTACA TCTGGCTAAC CTGA
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| Protein sequence | MSQILLIDDD LGLAELLAQL LELEGFNLTL AHDGEAGLAL ALEQQFDLIL LDVMLPKLNG
FEVLKALRSK KQTPVLMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELVA RIKAIIRRTS
HQMDEQQPSI LEFADIKLDP SRQEVLCQDQ LLILTGTEFS LLYHMIQHSG EVLSKDNLSE
NVLGKKLMPF DRSLDMHLSN LRKKLPERAD GRPRVKTLRG KGYIWLT
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