| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3561 |
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| Symbol | |
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| ID | 4922696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4252021 |
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| End bp | 4253430 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640165183 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001095686 |
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| Protein GI | 127514489 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAA AAGTTTGGGT TCTCGATGAT GATAGTTCGA TACGTTGGGT CGTCGAACGG
GCGCTCAAGG GCGCCAAGAT AAGCTGCGCC AGCTTCGCCG CCGCCGAATC CCTGTGGCAG
GCATTGGAAC AGACCCAACC CCAGGTGATC ATCTCGGATA TCCGTATGCC GGGTACCGAT
GGCCTGACCC TGCTGGATCG CCTGCAGCTG CACTATCCCC ATATTCCCGT GATCATCATG
ACGGCCCATT CCGACCTCGA CAGCGCCGTC AGCGCCTATC AGGCGGGAGC CTTCGAGTAT
CTGCCCAAGC CATTCGATAT CGACGAGGCG ATCGGCCTGG TGGAGCGTGC CCTGAGCCAT
GCCAAGGAGC AGTCACCCAA GGTCATTAGC CAGCCCGAAG TCAAGGCACC GGAGATCATC
GGCGAGGCAC CTGCCATGCA GGAGGTATTT CGCGCCATCG GCCGCCTGTC ACGCTCCTCC
ATCAGCGTGT TGATCAACGG TCAGTCGGGC ACGGGTAAGG AGCTGGTCGC CGGTGCCCTG
CATAAACACA GTCCGCGCAA GGACAAGCCC TTCATCGCCC TCAACATGGC GGCGATCCCC
AAGGAACTGA TCGAATCTGA GCTGTTCGGC CACGAGAAGG GCGCCTTCAC CGGCGCCGCC
AACGTGCGTC AGGGCCGCTT CGAGCAGGCC GATGGCGGCA CACTGTTTCT CGATGAGATC
GGCGACATGC CGCTGGATGT GCAGACCCGT TTGCTGCGGG TATTGGCAGA CGGTCAGTTC
TATCGTATCG GTGGTCACTC GCCGGTGCAG GTGGATGTGC GCATCATAGC CGCGACCCAC
CAGAACCTGG AGTCTCTGGT AGCCAAGGGG GATTTTCGTG AGGATCTCTT CCACCGCCTC
AACGTGATCC GGGTGCATCT GCCGCCGCTA TCACAGCGCC GGGAGGATAT TCCTCAGCTG
GCACGCCACT TCCTGGCTAC CGCCGCCAAG GAGATCAGCG TCGAGCCTAA GATACTCACC
AAGGCGACCG CCGACACTCT GGCCAGCCTG CCCTGGCCCG GTAACGTGCG TCAGCTGGAA
AACACCTGTC GCTGGCTGAT GGTGATGGCC TCGGGCCAGG AGATCTTGCC TCAGGATCTG
CCGCCTGAGC TGCTGACACC CAGCAACAGC CACGACAGCT CGCCCCAGGC GGGCAGCGGT
GGCTGGCAGG AGGCTCTGAC CCAGTGGATA GATCAACGCC TGAGCGAAGG CGAGAGCGAT
CTGCTGACCC AGATACAGCC TGCGTTTGAA AAGATATTGC TAGAGACGGC GCTGAAACAC
ACCAAGGGAC ACAAACAGGA AGCAGCTAAG CGCCTGGGCT GGGGTCGTAA TACCCTGACG
CGTAAGCTGA AAGAACTCGA GATGGATTGA
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| Protein sequence | MTEKVWVLDD DSSIRWVVER ALKGAKISCA SFAAAESLWQ ALEQTQPQVI ISDIRMPGTD
GLTLLDRLQL HYPHIPVIIM TAHSDLDSAV SAYQAGAFEY LPKPFDIDEA IGLVERALSH
AKEQSPKVIS QPEVKAPEII GEAPAMQEVF RAIGRLSRSS ISVLINGQSG TGKELVAGAL
HKHSPRKDKP FIALNMAAIP KELIESELFG HEKGAFTGAA NVRQGRFEQA DGGTLFLDEI
GDMPLDVQTR LLRVLADGQF YRIGGHSPVQ VDVRIIAATH QNLESLVAKG DFREDLFHRL
NVIRVHLPPL SQRREDIPQL ARHFLATAAK EISVEPKILT KATADTLASL PWPGNVRQLE
NTCRWLMVMA SGQEILPQDL PPELLTPSNS HDSSPQAGSG GWQEALTQWI DQRLSEGESD
LLTQIQPAFE KILLETALKH TKGHKQEAAK RLGWGRNTLT RKLKELEMD
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