| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3553 |
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| Symbol | |
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| ID | 4922688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4242295 |
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| End bp | 4244118 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165175 |
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| Product | GTP-binding protein TypA |
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| Protein accession | YP_001095678 |
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| Protein GI | 127514481 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.718809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAGAGA ATTTACGTAA CATCGCCATT ATTGCACACG TTGACCATGG TAAAACGACC
CTGGTTGATA AGCTGCTGGC ACAGTCTGGA ACCCTTGAGA CTCGAGGAGA GGCCGCTGAG
CGGGTGATGG ATTCCAACGA TCTTGAAAAG GAACGTGGAA TCACGATTCT GGCGAAGAAT
ACTGCCATCA AGTGGAACGA TTACCGTATC AACATCGTTG ATACCCCTGG CCACGCCGAT
TTCGGTGGCG AGGTAGAACG TGTACTTTCT ATGGTTGACT GTGTGCTACT GCTAGTTGAT
GCGGTCGATG GTCCAATGCC ACAGACACGT TTCGTGACTA AGAAAGCCTT CGCTCAAGGC
CTTAAGCCTA TCGTAGTGAT CAACAAGATC GACCGTCCGG GTGCGCGCCC TGATTGGGTT
ATCGATCAAG TATTCGACCT GTTCGACAAC CTGGGTGCTA CCGACGAGCA GCTGGACTTC
CCAATCGTTT ATGCGTCTGC ACTGAACGGT TTCGCGACTC TGGATCCTGA AGAGACTGGC
GCAGACATGA CGCCACTGTT CGAGACCATC GTCGAGAAAG TATCTTCACC TGACGCCGAT
GCCGAAGGTG CCTTCCAGAT GCAGATCTCT CAGCTGGACT ACAACTCATA CGTGGGCGTT
ATCGGCGTTG GCCGTATCAA GCGCGGCAGC GTTAAGGTAA ACCAGCAGGT TACCGTAGTG
GGCGCTGACG GCACCACACG TAACGGTAAG ATCGGCCAGG TACTTGGTTA CATGGGTCTG
GACCGTCACG AAGTGGCTGA AGCTAATGCC GGCGACATCG TAGCGATCAC AGGTCTTGGC
GAGCTGAAGA TCTCTGACAC TGTATGTGCC GTGGGCAACG CCGAAGCCTT GCCACCTCTG
TCTGTTGACG AGCCAACATT GACCATGACC TTCCAGGTAA ACACCTCGCC ATTCGCTGGT
AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATCCTTGAGC GTCTGCAACA GGAACTGGTA
CACAACGTGG CACTGCGCGT CGAAGAGACA GACAGCCCAG ACCGTTTCCG CGTATCGGGC
CGTGGTGAAC TTCACCTGTC TATCCTTATC GAAAACATGC GTCGTGAAGG CTACGAGCTG
GCCGTATCGC GTCCTGAAGT TATCGTTAAA GAGATCGACG GCGAGAAGTG CGAGCCATAC
GAGACGCTGA CCGTTGACGT TGAAGAAGAG CACCAAGGTG CGGTGATCGA GAAGCTAGGT
ACCCGTAAGG CGGACATGCG CGACATGCAG CCAGACGGTA AAGGCCGTGT GCGTATCGAC
TTCATCATTC CTAGCCGTGG CCTGATCGGT TTCCAAACCG AGTTTATGAC AGCCACTTCT
GGTACAGGTC TTATCTACCA CTCATTCGAC CATTATGGTC CAGTGAAGGG TGGCGATATC
GGTCAACGTC AGAACGGTGT GTTGATCTCT AACGCTACCG GTAAGGCACT GACCTTCGCC
CTGTTCGGTC TGCAAGACCG TGGTCGTCTG ATGATCGGTC ACGCGGCAGA AGTTTATGAA
GGCCAGGTAG TGGGTATCCA CTCTCGTGCC AACGACCTGA CAGTTAACTG TCTGAAGGGT
AAGCAGCTGA CCAACATGCG TGCCTCTGGT ACCGACGAAG CTCAGGTACT GACACCGCAC
ATCCAGATGA CCCTAGAGCA GGCGCTCGAG TTTATCGATG ACGACGAATT GGTAGAAGTG
ACTCCGCAGA GCATCCGCGT GCGTAAGCGT CACCTGACCG AAAACGATCG TAAGCGTGCC
AGCCGCGCCT CGAAAGACGC TTAA
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| Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKLLAQSG TLETRGEAAE RVMDSNDLEK ERGITILAKN
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDCVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPEETG
ADMTPLFETI VEKVSSPDAD AEGAFQMQIS QLDYNSYVGV IGVGRIKRGS VKVNQQVTVV
GADGTTRNGK IGQVLGYMGL DRHEVAEANA GDIVAITGLG ELKISDTVCA VGNAEALPPL
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFRVSG
RGELHLSILI ENMRREGYEL AVSRPEVIVK EIDGEKCEPY ETLTVDVEEE HQGAVIEKLG
TRKADMRDMQ PDGKGRVRID FIIPSRGLIG FQTEFMTATS GTGLIYHSFD HYGPVKGGDI
GQRQNGVLIS NATGKALTFA LFGLQDRGRL MIGHAAEVYE GQVVGIHSRA NDLTVNCLKG
KQLTNMRASG TDEAQVLTPH IQMTLEQALE FIDDDELVEV TPQSIRVRKR HLTENDRKRA
SRASKDA
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