Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3545 |
Symbol | rbn |
ID | 4922848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4232628 |
End bp | 4233485 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640165167 |
Product | ribonuclease BN |
Protein accession | YP_001095670 |
Protein GI | 127514473 |
COG category | [S] Function unknown |
COG ID | [COG1295] Predicted membrane protein |
TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.109526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACATC TAAAACAGCG TATCACGGAA GACCAGATAA ATATGCGGGC GGGTCACCTG GCTTACGTTA CCTTGCTCTC TCTGGTACCT ATGGTGGCAG TGACCATGTC TATGCTGTCG GCCTTCCCCG TGTTTAAGGG GATCCGCAGC CATATCGAGA CCTTCATCTA CGAGAATTTT ATCCCCTCTG CCGGCGACAG CGTGCAGATG TATATCAACG AGTTTGTGGC CAACGCCTCC AAGGGTACGG CCGTGGGTAT CGGCGCCCTG GTGGTAGTGG CTATTCTGCT GATCTCCAAT ATCGACAAGT CACTCAACGG CATCTGGCGC ACCACGGAGA AGCGCCCCAT GGTGGTCTCC TTCTCCATGT ATTGGATGGT GCTGACCCTG GGCCCTGTGT TGATGGGTGC CAGCCTGGTG GCCACCTCTT ATGTGGTGTC GCTCAAGTTG TTTAGCGGCA CAGATCTTAG CGGTGTGGTG CCCCTCTTAG TTGAGCGTCT GCCCATGTTC TTCTCTGTGG CCACCTTCCT GCTGATCTAC ATGGTGGTGC CCAATACCAA GGTGAAGTTT TTCCACGCCC TGCTGGGCGC CATCGTGGCG GCTCTGTTGT TTGAGCTGGG TAAGAAGGGC TTTGCCCTTT ATCTCACCGA GTTTCCCGCC TATGAAGCTA TCTATGGCGC GCTGGCGACT ATCCCTATCC TGTTTATGTG GGTCTATCTC TCCTGGATTA TCGTACTGAT CGGCGCCGAG ATCACCGCCG CCATGCCTGA GTACCTCGAT AAGCGTCTGA TGGACTTGGT GAATAAGGAG CTGGCGGACG ATGAGTCGGA GATCCACTTA GATGAGCACA AAAGGTGA
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Protein sequence | MIHLKQRITE DQINMRAGHL AYVTLLSLVP MVAVTMSMLS AFPVFKGIRS HIETFIYENF IPSAGDSVQM YINEFVANAS KGTAVGIGAL VVVAILLISN IDKSLNGIWR TTEKRPMVVS FSMYWMVLTL GPVLMGASLV ATSYVVSLKL FSGTDLSGVV PLLVERLPMF FSVATFLLIY MVVPNTKVKF FHALLGAIVA ALLFELGKKG FALYLTEFPA YEAIYGALAT IPILFMWVYL SWIIVLIGAE ITAAMPEYLD KRLMDLVNKE LADDESEIHL DEHKR
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