| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3534 |
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| Symbol | |
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| ID | 4922867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4221817 |
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| End bp | 4224960 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165156 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001095659 |
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| Protein GI | 127514462 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAGA AAATTATCGA GGCCTCCATC GCCCAGCGAT TGATGGTGTT GATCATCGCA
CTGATGATCA CCGTCTGGGG CGTGCAGGAG CTGAGAAAGA CGCCTTTGGA TGCGCTGCCG
GATCTGTCGG ACGTGCAGGT GATCATCAAG ACGCCTTATC CAGGTCAGGC GCCTAAGCTG
GTGGAAGAGC AGGTGACCTA CCCTCTGTCG ACCGCCATGT TGGCGGTACC CGGTGCCAAG
ACAGTGCGGG GTTACTCCTT CTTCGGTGAC TCCTATGTCT ATGTGATCTT CGAAGATGGC
ACAGATATCT ACTGGGCGCG GTCACGGGTG CTGGAATACC TGAGCCAGGT TAGCAGCCGC
TTGCCCCAAG GGCTTCAGCC ATCGCTGGGG CCAGACGCAT CGGGTGTCGG CTGGATCTAT
GAATATGCCT TGGTGGATCG CTCGGGTAAC CTGGATCTCT CACAGCTCAA GAGCCTGCAG
GACTGGTATC TCAAGCTAGA GCTACAGAGC GTGGCCGGGG TATCCGAGGT GGCGACCGTC
GGCGGCATGG AGCAGACCTA TCAGATAGTG ATCGAGCCCG ACAAGCTGGC TATCTATAAG
CTGGATATCG CTGCGGTGAA GAACGCCATC AACAAGTCCA ATACCGAGGC GGGCGGCTCA
GTGATCGAGA TGGCCGAGGC CGAATATATG GTGCGCGCCA AGGGCTATCG TCAGACGCTG
GATGACTTCA GGGAGATCCC TCTGGGGGTC ACCAGTCCTT CTGGCACCGC GCTGCTACTC
AAAGATGTGG CGACCGTGCG CAAGGGGCCT GCCTCACGGC GCGGTATTGC CGAGCTCGAT
GGTGAAGGCG AGGTGGTCGG CGGCATTATC GTGATGCGCT ATGGTGAAAA CGCCCTGGCC
ACCATAGACG CGGTCAAGGC TAAGCTGGAG CAGCTCAAGG CGGGTCTGCC ACAAGGGGTG
GAGATCATCC CCACCTATGA CAGATCTGAG CTGATCAACA AGTCGGTGGA CAACCTGTTC
CACAAGGTGA TCGAAGAGAT GCTGGTGGTG GGCCTGGTGT GTCTGCTGTT CCTGCTGCAT
GCCCGCTCGA CCCTGGTTGC GGTGATCACC CTTCCGCTGT CGATTCTGAT CGCCTTCATC
GTGATGAATA AGATGGGGGT GAACGCCAAC ATCATGAGCT TGGGCGGTAT CGCCATCGCC
ATCGGCGCCG TGGTGGATGG TGCCATCGTG ATGATCGAGA ACATGCACAA GCATCTGGAG
CACTTTAAGG ATGAGTACCG CAGGGATCCG GACAACAAGG AGCACTGGCA TATCGTCGCC
AAGGCCTCCA TCGAGGTGGG CCCGGCGCTG TTCTTCTCGC TGTTGATCAT CACCCTGAGC
TTCGTACCCG TGTTTGCCTT GGAGGCTCAG GAGGGACGTT TGTTTAGCCC GCTGGCCTAC
ACCAAGACCT TTGCCATGGC CGCGGCGGCG ATTCTGTCGA TCACCTTAGT GCCTATCCTG
ATGGGCTACT TTATTCGCGG CAAGATCCCC AAGGAGACCA GCAATCCCAT CAGCCGGGTG
TTGATTGCCC TCTATAAGCC GGCGCTCAAT ATGGTGCTGC GCTTCCCCAA GATCACCCTG
ATGCTGGCGG TGATCGCCCT GGGCAGCGCC TGGTATCCTG TGACCAAGAT GGGCAGCGAG
TTCATGCCCG AGCTGGAGGA GGGGGATCTG CTCTACATGC CGACGGCCCT GCCTGGCATT
AGCGCCAGTA AGGCAGCCGA GGTGCTGCAA CAGACAGACA GGCTGATCAA GACGGTGCCC
GAGGTGAAGC GGGTCTTCGG TAAGGTGGGA CGCGCCGAGA CGGCGACCGA CCCCGCGCCG
CTCACCATGC TGGAGACTAC CATCATGCTC AAGCCCAGAG AGGAGTGGCG TGAAGGTGTG
GATCTCCAAG GGGTGATCGA TCAGCTACAG AAGACGGTCA AGGTGCCTGG CTTGACGAAC
GCCTGGGTGC AGCCGATCAA GACGCGTATC GACATGCTCT CTACCGGTAT CAAGACCCCT
GTGGGGATCA AGATCACCGG CGCCGACGTC AACGAGCTGC AGAAAGTGGG GGCCGATATC
GAGGCGATCC TCAGCCAGCT ACCCAACACC AAGTCGGCCT ACGCCGAGCG GGTGGGCGGT
GGCCGTTACG TGGATATAAC GCCTAAGCTG GATGTGGCCT CACGCTACGG CATGACGCTG
ACCGACATTC AGGATGTGGT GCGTTACGCC ATCGGCGGCA TGGATATCGG CGAGTCGATT
CAGGGGGCCG AGCGTTACCC GATCAACCTG CGTTATCCGC GGGCGCTGAG GGACAATATC
GAGAAGCTCA GGGAGCTGCC GGTGATCACT AAGTCAGGTC ACTATCTGCC GCTGCGCAAC
CTGGCCGATA TCGAGATCAC CGACGGCGCG CCTATGCTCA AGAGTGAGAA CGGCCGCCTG
ATCTCCTGGG TGTTTGTGGA TATTCAAAAC ACCTCGATCG GTGAGTATAT CGATGAGGCT
AAGTCGGCGC TGGATCAGCA GCTCAAGGTG CCACCGAGAT ATAGCTACAG TTTCGCCGGC
CAGTATGAGT ATATGCAGCG GGTCGATGCC AAGCTGAAGA AGGTGATCCC TATGGCACTT
GGGGTGATCT TCATCCTGCT GATGATGACC TTCGGCTCGC CGCTTCAGGC CTCTATCATC
ATGTTGAGTC TGCCTTTCGC CTTGGTGGGC AGCACCTGGT TGCTGTTCGC GCTGGACTTC
AACATGTCGG TGGCGGTGGC GGTGGGGATG ATCGCGCTGG CCGGGGTGGC GGCGGAGTTT
GGGGTGGTGA TGCTGGTCTA TCTCAATAAT GCCATCAAGC ACCGTAAAGA CACCGGCGGC
TACGAGTATG TGGCGGATCT CAAGGAGGCC CTGATAGAAG GCGCCGTGAT GCGTATTCGT
CCCAAGGCGA TGACGGTAGC GACCATCTTC TTCGGCCTCT TGCCCATCAT GTGGGGTGCA
GGCTCGGGTA ATGATGTGAT GCAAAAAATT GCCGCGCCTA TGGTGGGCGG CATGATCACA
GCGCCGCTGC TGTCGCTGTT TGTGCTGCCG GCCCTCTATT TGCTGATCTA TGGACGTCGC
CTCAAGCACT CTGCCGAGGC TTGA
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| Protein sequence | MLKKIIEASI AQRLMVLIIA LMITVWGVQE LRKTPLDALP DLSDVQVIIK TPYPGQAPKL
VEEQVTYPLS TAMLAVPGAK TVRGYSFFGD SYVYVIFEDG TDIYWARSRV LEYLSQVSSR
LPQGLQPSLG PDASGVGWIY EYALVDRSGN LDLSQLKSLQ DWYLKLELQS VAGVSEVATV
GGMEQTYQIV IEPDKLAIYK LDIAAVKNAI NKSNTEAGGS VIEMAEAEYM VRAKGYRQTL
DDFREIPLGV TSPSGTALLL KDVATVRKGP ASRRGIAELD GEGEVVGGII VMRYGENALA
TIDAVKAKLE QLKAGLPQGV EIIPTYDRSE LINKSVDNLF HKVIEEMLVV GLVCLLFLLH
ARSTLVAVIT LPLSILIAFI VMNKMGVNAN IMSLGGIAIA IGAVVDGAIV MIENMHKHLE
HFKDEYRRDP DNKEHWHIVA KASIEVGPAL FFSLLIITLS FVPVFALEAQ EGRLFSPLAY
TKTFAMAAAA ILSITLVPIL MGYFIRGKIP KETSNPISRV LIALYKPALN MVLRFPKITL
MLAVIALGSA WYPVTKMGSE FMPELEEGDL LYMPTALPGI SASKAAEVLQ QTDRLIKTVP
EVKRVFGKVG RAETATDPAP LTMLETTIML KPREEWREGV DLQGVIDQLQ KTVKVPGLTN
AWVQPIKTRI DMLSTGIKTP VGIKITGADV NELQKVGADI EAILSQLPNT KSAYAERVGG
GRYVDITPKL DVASRYGMTL TDIQDVVRYA IGGMDIGESI QGAERYPINL RYPRALRDNI
EKLRELPVIT KSGHYLPLRN LADIEITDGA PMLKSENGRL ISWVFVDIQN TSIGEYIDEA
KSALDQQLKV PPRYSYSFAG QYEYMQRVDA KLKKVIPMAL GVIFILLMMT FGSPLQASII
MLSLPFALVG STWLLFALDF NMSVAVAVGM IALAGVAAEF GVVMLVYLNN AIKHRKDTGG
YEYVADLKEA LIEGAVMRIR PKAMTVATIF FGLLPIMWGA GSGNDVMQKI AAPMVGGMIT
APLLSLFVLP ALYLLIYGRR LKHSAEA
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