| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3517 |
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| Symbol | |
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| ID | 4922969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4203149 |
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| End bp | 4204711 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165139 |
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| Product | histidine ammonia-lyase |
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| Protein accession | YP_001095642 |
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| Protein GI | 127514445 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2986] Histidine ammonia-lyase |
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| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAGA CGACTCAATC CCCCGCCTCC GCCACCCTGG TCGAATTTGG CCAGCGTAAT
CTCAATCTCG AGGAGGTCGT TGCCATCGCC AAGGGCGCCA AGGCCCAGCT CAAGGAGAGC
GCCGACTATC AGGAATATAT CCAGAAAGGT GCCCGCTTTA TCGACAGCCT GTTAGCCGAA
GAGGGCGTGG TCTATGGCGT CACCACAGGC TACGGCGACT CCTGTACCGT CACAGTCGGC
CTGGATCTGG TGCACGAACT GCCACTGCAT CTGTCGCGTT TCCACGGCTG TGGCATGGGT
AACATTCTCT CCGTCATGCA GGCCAGGGCC GTGATGGCGT GCCGCCTAAG CTCGCTGGCC
GTGGGTAAAT CTGGCGTCAG CTACGAACTG CTGAAACGCA TCGAGACTCT GCTGAACCTG
GGTATCACCC CAGTGATCCC GGAAGAGGGT TCTGTGGGCG CCAGCGGCGA TCTCACCCCT
CTCTCCTACC TAGCCGCCGT GCTAGTGGGT GAGCGCGAGG TGATCTACCA AGGCGAGCGC
CGCGCTACCG CAGATGTGTA CCGTGAACTA GACATTACCC CGTTGACTCT GCGTCCCAAG
GAGGGTCTGG CCCTGATGAA CGGCACCGCC GTCATGACGG CGCTGGCCTG TCTTGCCTAC
GACAGGGCTC AATACCTGAA CCGTCTGGCC AGCCGTATCA CTGCCATGGC CTCGCTGACG
CTCAAGGGTA ACTCCAACCA TTTCGACGAT ATCCTGTTTG CGGCCAAGCC CCATCCGGGC
CAAAACCAGA TCGCAGCCTG GATACGCGAA GATCTCAACC ACCACGAGCA TCCACGCAAC
TCGGATCGCC TACAAGACAG ATACTCGATC CGCTGCGCGC CGCACATCAT AGGCGTGCTG
CAAGATGCCC TGCCCTTCAT GCGTCAGTTT ATCGAGACCG AACTCAATAG CGCCAACGAC
AACCCTATCG TCGACGGCGA GGGCGAGCAC GTGCTCCACG GCGGCCACTT CTATGGCGGT
CATATCGGTT TCGTGATGGA CTCGATGAAG AACGCCATCG CCAATATCGC CGACCTTATC
GACCGACAGA TGGCCCTAGT GATGGACCCT AAATTTAACA ATGGCCTGCC CGCCAACCTC
TCTGGCGCCC AAGGCAGCCG CAAGGCGATC AATCACGGCT TCAAGGCGGT GCAGATAGGC
GTATCGGCCT GGACCGCCGA AGCGCTGAAG AACACTATGC CTGCCAGCGT CTTCTCACGC
TCCACCGAGT GTCACAACCA AGACAAGGTG AGCATGGGCA CTATCGCCGC CCGCGACTGT
ATGCGCGTGT TGCAACTCAC CGAACAGGTG GCCGCGGCTG CGCTGCTGGC CATGACCCAG
GGCATTCACT TGCGTATCGC CCAGGGCGAG CTCTGCCATG CCTCGCTCAC CACCTCTGTC
GCCAAGACCC TAGATCAGGT CAGCGCCGAC TTTGAACTGC TCACCGAAGA CAGCCCCCTG
GAGACCGTAC TCAGACAGAC GGTAGACAAG ATCCAGCAGG GACTGTGGGA AGTGTGTCAC
TAG
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| Protein sequence | MTQTTQSPAS ATLVEFGQRN LNLEEVVAIA KGAKAQLKES ADYQEYIQKG ARFIDSLLAE
EGVVYGVTTG YGDSCTVTVG LDLVHELPLH LSRFHGCGMG NILSVMQARA VMACRLSSLA
VGKSGVSYEL LKRIETLLNL GITPVIPEEG SVGASGDLTP LSYLAAVLVG EREVIYQGER
RATADVYREL DITPLTLRPK EGLALMNGTA VMTALACLAY DRAQYLNRLA SRITAMASLT
LKGNSNHFDD ILFAAKPHPG QNQIAAWIRE DLNHHEHPRN SDRLQDRYSI RCAPHIIGVL
QDALPFMRQF IETELNSAND NPIVDGEGEH VLHGGHFYGG HIGFVMDSMK NAIANIADLI
DRQMALVMDP KFNNGLPANL SGAQGSRKAI NHGFKAVQIG VSAWTAEALK NTMPASVFSR
STECHNQDKV SMGTIAARDC MRVLQLTEQV AAAALLAMTQ GIHLRIAQGE LCHASLTTSV
AKTLDQVSAD FELLTEDSPL ETVLRQTVDK IQQGLWEVCH
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