Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3505 |
Symbol | |
ID | 4923057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4192016 |
End bp | 4193107 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640165127 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001095630 |
Protein GI | 127514433 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAAT ACCCTATTCC ACACACCCTA GATATCGAGC GGGCGACCGA AGATAAGCTC GCCTGGGTCT ATCTGATCAA CCTGGGCTTC TATTTCATCC CGCTGTTCTT ACAGACTATG CCCACCTGGC ACATAGTCCT GAGTCTGGTC GTGCTGGTGC CCTTTATCTA CTGCTATTTT TGGGCCCACC GCAGCCCGAG TAAAACCGCC TACCAGCCTA TCTTGCTGAT CATCGCCCTG GCCTGTCTCA TCACGCCAAT TAATATCGGC TCGCTGTCCC TGTTTACCTT TGCCGGTTTC TTTATCGGCT TTAACTACTC CCTGCCCAAG GCCTTCGCCA GCCTTATCGG CTTAGCCGTC ATCCTGACGC TGTTGAGCCT AACCCTAGGT ATTCACTACT ACTTTGCGGT TTATGGCGTC GCCCTGATCA CCGGCGTGGG TTTCTTTGGT GTGGCCGAGC GTAAGCGGGT CGAAGCCAAA CGCGCCCAGC GGCAGAGTCA GCAGGAGATA CGCCAGCTCG CCACCATGTT AGAGCGTGAA CGTATCGCCC GGGATCTGCA CGACATCATG GGGCACTCGC TCTCCTCTAT CTCACTCAAG GCGGAGCTGG CGCGCAAACT ATTGGCCAAG GGGCAAGCCG ATCAGGCCAG CGCCGAGCTG GCAGAACTGG AAACCATCGC CCGAGACAGC CTCAGCCAGA TCCGCCAAAC GGTCTCAGGC TACAAACACA AAGGGTTAGA CGCCGCCCTG ACGCACCTGT GCCAGATGCT GAGGGACAAG GGCATGGCCG TTACCCTCTC TGGTGAGCTG CCATCACAGC CACAGGAAAT CGAGACCCAG TTGATCCTCA GCCTGACCGA GCTATGCAAC AATGTTGTGC GTCATAGCCA AGGCGATAGC TGTAATATCG ACTTGTCGGC AACACCTCAG GGGCTGCGGA TCTCGATTAC AGACAATGGT AAGCTGAGGC AGCTCAGCGA AGGCAATGGC CTCACCGGCA TACGCGAGCG ACTGCGCCCC TTAGGTGGTA CACTCAGTAT TGGGCTCGAG CCAAACCCAC AATTTATCAT CGAGTTACCA AATCAGGGAT AG
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Protein sequence | MDKYPIPHTL DIERATEDKL AWVYLINLGF YFIPLFLQTM PTWHIVLSLV VLVPFIYCYF WAHRSPSKTA YQPILLIIAL ACLITPINIG SLSLFTFAGF FIGFNYSLPK AFASLIGLAV ILTLLSLTLG IHYYFAVYGV ALITGVGFFG VAERKRVEAK RAQRQSQQEI RQLATMLERE RIARDLHDIM GHSLSSISLK AELARKLLAK GQADQASAEL AELETIARDS LSQIRQTVSG YKHKGLDAAL THLCQMLRDK GMAVTLSGEL PSQPQEIETQ LILSLTELCN NVVRHSQGDS CNIDLSATPQ GLRISITDNG KLRQLSEGNG LTGIRERLRP LGGTLSIGLE PNPQFIIELP NQG
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