| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3504 |
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| Symbol | |
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| ID | 4923056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4191250 |
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| End bp | 4191915 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165126 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001095629 |
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| Protein GI | 127514432 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAC TTATCATCGC CACCAGCCTG GCCCTACTCA GCCCGCTGAG CCAGGCCAAT
GACATTACCG AGATAGACAG CGCCGCCAAT CAGATGGATA TCGCTCGTCT AAGCCAATTG
AGCGACCAAA GCCAAGGCTA TGAGCAGGCC TACGCCCTCT ATCGCATGGC CATCAGTGCC
AACATTCTCA GCCAGAAGGA TCAGGCCCAG GCGGCATTGA CCCGCGCCGA GAAGGCGTTG
TCGCCCATTG CCGACCAAGG TGAAGCCGCC ACCCTACTGG CCTCTGTCTA CGGCATGCAG
ATAGGCTTAG ACATGAGTCA GGCCGCCAAA TACAGCACTA AGATGGCCGG TGCCCTCAAT
GACGCCGAAA CCTTGGTGCC CCAGAGCCCC CGACTGGCAC TGGTCAAGGC GATCGCCGCC
TATTCCAGCC CTAAAGACCA TGGCGGCAGC ATGAAAAATG CCATCGCTTT TAGCTCAAAA
GCCATTGATC TATATCGAGA ACCTTGCGAT AACATCTGTT GGGGAGAGGC AGAGGCCTAC
ACCTGGCGCG GCTTAGCCAA GCAGAATCTC GGTGACAAGG CGGGAGCCAT TGCCGATTGG
CAGGCCGCCC TGCAGGTACA GGCCGATTAT GCCTGGGCAA ATTTCCTGCT CAAACAGAAC
CACTAA
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| Protein sequence | MKTLIIATSL ALLSPLSQAN DITEIDSAAN QMDIARLSQL SDQSQGYEQA YALYRMAISA
NILSQKDQAQ AALTRAEKAL SPIADQGEAA TLLASVYGMQ IGLDMSQAAK YSTKMAGALN
DAETLVPQSP RLALVKAIAA YSSPKDHGGS MKNAIAFSSK AIDLYREPCD NICWGEAEAY
TWRGLAKQNL GDKAGAIADW QAALQVQADY AWANFLLKQN H
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