Gene Shew_3501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3501 
Symbol 
ID4923053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4187240 
End bp4187944 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content60% 
IMG OID640165123 
ProducttRNA guanosine-2'-O-methyltransferase 
Protein accessionYP_001095626 
Protein GI127514429 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCAG AACGCTTCAA ACGCATCAAC CAGATGCTGG ACAACCGCCA GACCGACCTC 
ACTGTCTGCC TGGACAAGGT GCATAAAACC AACAATATCG CCGCGGTGAT CCGCACCGCC
GACGCCGTGG GCATACATCA AATCCACGCC GTCTGGCCCG ATATCGAGAT GCGCGTCTCG
GGCAATACCG CCTCGGGCAG CCAGCAGTGG GTCAAAACCA TCAAGCACTA CCACATGGAT
GAGGCCGCGG CCCAGTTCAA GGCGGCGGGC ATGCAGATTC TGGCCACCAA CTTCTCAGAA
AATGCGGTGG ATTTTCGCGA CATCGACTAT ACCAAGCCGA CGGTGGTGAT CATGGGTAAC
GAACGCGACG GCGTCAGCGA GGAAGGGCTG GCCATCGCCG ATCAGCAGAT CATCATCCCC
ATGATAGGCA TGGTGCAGTC CCTCAATGTG TCTGTGGCCT CCGCCCTGGT GATGTATGAA
GCACAGCGTC AACGCGCCGA GGCCGGTATG TATGGCCAGC GCACCCTAGA CGACGCCTAC
TGCCAGACCA TGCTGTTCGA GCAGGGCCAC CCTGTGTACG CCAAGGCCTG TCGACGCAAG
AAGATCCCCT ATCCCGCCAT CGACGAAAAG GGGCAAATTG TCGCCGACGA GACCTGGTGG
CAGCGGATGC GCGCCCCGGA CCCGGACGCC GAGCCAGAAG CCTAA
 
Protein sequence
MSPERFKRIN QMLDNRQTDL TVCLDKVHKT NNIAAVIRTA DAVGIHQIHA VWPDIEMRVS 
GNTASGSQQW VKTIKHYHMD EAAAQFKAAG MQILATNFSE NAVDFRDIDY TKPTVVIMGN
ERDGVSEEGL AIADQQIIIP MIGMVQSLNV SVASALVMYE AQRQRAEAGM YGQRTLDDAY
CQTMLFEQGH PVYAKACRRK KIPYPAIDEK GQIVADETWW QRMRAPDPDA EPEA