| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3499 |
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| Symbol | |
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| ID | 4923051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4184648 |
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| End bp | 4186753 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165121 |
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| Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
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| Protein accession | YP_001095624 |
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| Protein GI | 127514427 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCGTCAAGTT ACTTAGAAGC GACGCAGGTA
GAATTACTCA AGCAGGCCTA TCAGGTAGCG CGCGATGCTC ATGAAGGGCA GATGCGCACG
AGTGGCGAAC CCTACATTAC CCATCCGGTT GCGGTTGCCC GCATCTTGGC CGATATGCGT
CTCGATCATG AGACACTCAT GGCCGCCCTG CTGCACGACA CCATTGAAGA TACCCCTGTC
ACCAAAGAAG AGCTCTCGGA GCTGTTTGGT GAGTCTGTGG GCGAGCTGGT CGAAGGCGTC
TCCAAGCTGG ACAAGCTAAA GTTCAGAGAC AAGAAAGAAG CTCAGGCGGA AAACTTCCGC
AAGATGATGA TGGCCATGAC CCAGGATATC CGGGTGATCC TCATCAAGCT GGCCGACCGC
ACCCACAACA TGCGCACCCT TGGCGCCCTG CGTCCCGACA AGCGTCGCCG CATCGCCCGC
GAAACCCTGG AAATTTACGC CCCCATCGCC AACCGTCTGG GTATTCACAA TATCAAGACT
GAACTGGAAG ATCTGGGCTT TCAGGCCTAT TACCCCATGC GCTACCGGGT ACTCAAAGAG
GTGGTCAAGT CTGCACGTGG CAACCGAAAA GAGCTGATCC AGAATATCGA AGGCGCTATC
AAGACCCGCC TCGAAGACAC AGGTCTCAAG GGCACGGTCA AGGGCCGAGA GAAAAACCTC
TATTCCATCT ACAACAAGAT GTGTAACAAG GAACTCCAGT TCCAAGAGGT GATGGATATC
TATGCGTTTC GGGTGATCGT CGACTCCATT GACACCTGTT ATCGCGTCAT GGGCGCCATG
CACGGCCTGT ATAAGCCGCG TCCCGGTCGC TTCAAAGATT ATATTGCCAT CCCCAAGGCT
AACGGTTATC AGTCGCTGCA TACCTCGCTA TTTGGTCCAC ACGGCGTACC GGTGGAGATC
CAGATTCGTA CCGAAGATAT GGATCAGATG GCCGACAAGG GGGTTGCGGC CCACTGGCTC
TACAAGGGCG CCGGTTCGGC CCAGCAAGGC ACCACCACTC AGGTGCGTGC CCGCAAGTGG
ATGCAGAGCC TGCTGGAGCT GCAACAGAGC GCCAGCACCT CCTTCGAATT CGTCGAAAAC
TTCAAGACAG AGCTGTTCCC GGAAGAGATC TATGTCTTCA CCCCAGAGGG ACGCATTCTC
GAGCTACCTG TGGGCGCCAC TGCGGTGGAC TTTGCCTACG AGGTGCATAC CGACGTGGGC
AACACCTGTG TCGGCGCGCG GGTCAACCGT CAGGCCTATC CGCTGAGTCA GCCGCTGATT
TCCGGTCAGA CTATCGAGAT CATCACCGCC AAGGGCGCGC GCCCCAACGC CGCCTGGCTC
AACTTCGTGG TGACGGGTAA GGCACGCGCT AAGATCAGAC AGCTGCTCAA GAGCCTCAAA
GAAGACGATG CCGTACTGCT CGGCAAGCGT CTGCTCAACC ACGCCCTGGG CGACATCAAG
CTCAAGGATA TCCCTCAGGA GCAGATCGAT AAGGTGGTGA GCGAGACCAA ACACGCCACC
CTAGATTCCC TGCTGGCCGA CATCGGCCTG GGCAACGCCA TGAGCATAGT GATTGCCCAG
CGTCTCAAGG GCGATCGGGT CGAGCAGCAC GAACATAAAG AATCCAACAT GATGCCGATC
CGCGGCGCCG AAGGCATGCT GGTCTCCTTC GCCAACTGTT GTCGCCCTAT CCCAGGTGAT
GCGGTGATCG CCCATGTGAG TCCGGGTAAA GGCCTGGTGG TGCACATGGA AAGCTGCGCC
AACATCCGCG GTTATCAGGG CGAGCCAGAC AAGTATATTC CTGTGCACTG GGATAACGCC
GAGGGCGTCG AGTTCCAGGC CAACCTGCGC ATCGAGATCG TCAACCACCA GGGCGCGCTG
GCCAAGATCA CCTCTATCGT GGCCGCCGAG GGCTCGAATA TCCATAACCT GAGCACCGAA
GAGCGCGACG GCCGGGTATT CTTGATTAAC TTACGGATCT CGGTCACCGA CCGGGTCCAC
TTAGCCAACG TGATGCGCCG TATCAGGGTA CTGCCGGAAG TGCTGCGCAC ATCGCGTAAT
CGTTAG
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| Protein sequence | MYLFEGLKES ASSYLEATQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR
LDHETLMAAL LHDTIEDTPV TKEELSELFG ESVGELVEGV SKLDKLKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT
ELEDLGFQAY YPMRYRVLKE VVKSARGNRK ELIQNIEGAI KTRLEDTGLK GTVKGREKNL
YSIYNKMCNK ELQFQEVMDI YAFRVIVDSI DTCYRVMGAM HGLYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWL YKGAGSAQQG TTTQVRARKW
MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATAVD FAYEVHTDVG
NTCVGARVNR QAYPLSQPLI SGQTIEIITA KGARPNAAWL NFVVTGKARA KIRQLLKSLK
EDDAVLLGKR LLNHALGDIK LKDIPQEQID KVVSETKHAT LDSLLADIGL GNAMSIVIAQ
RLKGDRVEQH EHKESNMMPI RGAEGMLVSF ANCCRPIPGD AVIAHVSPGK GLVVHMESCA
NIRGYQGEPD KYIPVHWDNA EGVEFQANLR IEIVNHQGAL AKITSIVAAE GSNIHNLSTE
ERDGRVFLIN LRISVTDRVH LANVMRRIRV LPEVLRTSRN R
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