| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3488 |
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| Symbol | rph |
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| ID | 4923166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4173696 |
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| End bp | 4174409 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640165110 |
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| Product | ribonuclease PH |
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| Protein accession | YP_001095613 |
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| Protein GI | 127514416 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCAA GTGACAGAAC CCCAGCTCAA TCTCGTCCGG TAACCATTAC GCGACAGTTC
ACTGCCCATG CAGAAGGTTC TGTATTAATC GAATTTGGCG AAACTAAGGT GCTGTGCACC
GCGAGCTTCA CCGAAGGGGT GCCACGCTTC CTGAAAGGTC AGGGCCAAGG TTGGGTAACC
GCCGAATATG GCATGTTGCC ACGCTCGACC CACAGCCGTA TGGATCGCGA GGCTGCCCGT
GGTAAGCAGT CTGGCCGTAC CCAGGAGATC CAGCGTCTAA TCGGCCGCGC TCTACGCGCA
GCGGTAGACA TGAAGGCACT GGGTGAAAAC ACTATCGTGA TCGACTGTGA CGTGATTCAG
GCCGATGGTG GTACCCGCAC CGCTGCCATT ACCGGTGCCT GTGTAGCCCT GGTTGATGCG
CTCAACTGGG CTCGTGGTAA GGGACTGATT AAGACCAACC CACTTAAGTT TTTGATTGCC
GCCGTCAGCG TAGGCATCTA CAAGGGTGAG CCTATCTGCG ATCTTGAGTA TGTGGAAGAT
AGCGCCGCCG AGACCGACAT GAACGTGGTG ATGACAGAAA CCGGTAAGAT CATCGAGATC
CAGGGCACTG CCGAGGGTGA ACCCTTTAGT CATGAAGAGC TACTCAGCTT GCTGGATCTG
GCCAAGCACG GCATTCGCGA GATCGTCGAT GTGCAGAAGG CGGCATTGAG TTAA
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| Protein sequence | MRPSDRTPAQ SRPVTITRQF TAHAEGSVLI EFGETKVLCT ASFTEGVPRF LKGQGQGWVT
AEYGMLPRST HSRMDREAAR GKQSGRTQEI QRLIGRALRA AVDMKALGEN TIVIDCDVIQ
ADGGTRTAAI TGACVALVDA LNWARGKGLI KTNPLKFLIA AVSVGIYKGE PICDLEYVED
SAAETDMNVV MTETGKIIEI QGTAEGEPFS HEELLSLLDL AKHGIREIVD VQKAALS
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