| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3474 |
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| Symbol | |
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| ID | 4922476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4160255 |
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| End bp | 4162087 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165096 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_001095599 |
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| Protein GI | 127514402 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTAG CCTTAACTTC TCCCGACGTG ACCGATAGCG ATCCGCTCGC CGCCTGCCTG
CAGACGGTGT TTGGCTATCG CACCTTCAGG ACGGGTCAGC GTGAGGTGAT AGAGCAGGTC
TGCGGCGGCC AGGATGCTCT GGTTATAATG CCTACCGGCG GCGGTAAGAG CCTGTGTTAT
CAGCTGCCGG CACTCGTCTT ACACGGGCTG ACCCTGGTGG TGTCGCCGCT GATCTCCCTG
ATGAAAGATC AGGTCGATAG CCTGAAACAG ATGGGCGTGG CCGCGGCCTA CCTCAACTCG
TCACAGTCGC GGGAAGAGGC GCTGACCATC TATCGCCAGC TGCATAACGG CGAACTCAAG
CTCTTGTATG TATCACCCGA GCGCCTGCTG ACCGACAGCT TCATCGAGCG TCTGCATAAC
CTGCCGCTCT CCCTGTTTGC CATCGACGAG GCTCACTGTA TTTCCCAGTG GGGGCACGAC
TTCCGCCCCG AATATGCGGC CCTTGGTCAG CTGAAGCAGC TGTTTCCTCG GGTGCCCATG
ATGGCGCTAA CGGCTACTGC CGACAAGGCG ACGCGCGAGG ATATCTGCCA GCGACTGGGT
ATAGCGCCCT TTGAGCTGCT CACCAGCTTC GATCGCCCCA ACATTCGTTA TACCGTGGCG
GAGAAGCTCA ACGCCGCCAA TCAGCTCAGG CAGTTTATCC AGGCGCAGAA TGGCAACAGT
GGCATCATCT ACTGTAGCAG TCGTCGTCGG GTGGATGAGG TGGCCGAGCG TCTGCGTATG
CAGGGCTATC ATGCCGATGC TTATCACGCG GGCAAAACCC AGGAGGAGCG CGCCGATATT
CAGGAACGTT TCCTAAAAGA TCAATTAGAT ATCGTGGTAG CCACCGTGGC TTTTGGCATG
GGGATCAACA AGTCCAACGT GCGCTTCGTG GTGCATTACG ATATTCCCAA GAGCGTCGAG
GCCTATTACC AGGAGACGGG CCGCGCCGGC CGTGATGGCC TGGATGCCGA GGCCTTTATG
CTGTTCGATC CCGCCGATAT CGGACGGGTG CGCCATCTCA TCGAGCAGCA GGAGCCGGGT
CCGCAGCAGC AGGTGGAGTA CCACAAGCTC AATACCATGG CGGCCTTTGC CGAGGCGCAA
ACCTGTCGCC GTCAGGTGCT GCTGCATTAC TTCGACGAGA GTGCGTCCGA GCCTTGCGGA
AACTGTGATA TCTGCTTAGA CCCACCCAAG CGGTACGACG GCGTCGAGGA TGCCCAGAAG
GTGCTCTCCT GCATCTTCCG CCTGCAGCAG AAGTTTGGTG TAAATCATCT TATCGAGGTG
CTGCGCGGCT CCAAGGCGGC CTCTGTGGTC GACCGTGGCC ACGACAAGCT GTCGACCTGG
GGTATAGGCA AGGAGAAGAG CCATGAGTTC TGGCTCAGTA TCATACGTCA GATCATTCAC
CTGGGTTTCG CCAGTCAGGA TATCACCAGA GGTTCGGCCA TTAAGCTTAA TCCTCAGGCG
CGGGCAGTGC TTAAGGGGGA GCTGCCGTTG CAGCTCGCCG AGCCGCGGAT CAGCATCACC
ACACATGTGA AGCGTCGCAG CAGTAGCCGG GCACCGATTA ACTACGACAG GAAACTGTTT
GCCCGCCTGA AGCAGCTGCG TCGCAGCCTG GCAGAAGAGT TGGATGTGCC GCCCTATCTG
GTGTTTAACG ACGCCACATT GGCGGAGATG GCCGCCATGT TGCCGACCAG CCCCGGCGAG
ATGCTGGCGG TGAACGGCGT GGGCGAGACC AAGCTAAATC GTTTCGGCGG CGAGTTTCTT
GACGAGATCA ACGACTACCT CACCCGCAGC TAG
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| Protein sequence | MDLALTSPDV TDSDPLAACL QTVFGYRTFR TGQREVIEQV CGGQDALVIM PTGGGKSLCY
QLPALVLHGL TLVVSPLISL MKDQVDSLKQ MGVAAAYLNS SQSREEALTI YRQLHNGELK
LLYVSPERLL TDSFIERLHN LPLSLFAIDE AHCISQWGHD FRPEYAALGQ LKQLFPRVPM
MALTATADKA TREDICQRLG IAPFELLTSF DRPNIRYTVA EKLNAANQLR QFIQAQNGNS
GIIYCSSRRR VDEVAERLRM QGYHADAYHA GKTQEERADI QERFLKDQLD IVVATVAFGM
GINKSNVRFV VHYDIPKSVE AYYQETGRAG RDGLDAEAFM LFDPADIGRV RHLIEQQEPG
PQQQVEYHKL NTMAAFAEAQ TCRRQVLLHY FDESASEPCG NCDICLDPPK RYDGVEDAQK
VLSCIFRLQQ KFGVNHLIEV LRGSKAASVV DRGHDKLSTW GIGKEKSHEF WLSIIRQIIH
LGFASQDITR GSAIKLNPQA RAVLKGELPL QLAEPRISIT THVKRRSSSR APINYDRKLF
ARLKQLRRSL AEELDVPPYL VFNDATLAEM AAMLPTSPGE MLAVNGVGET KLNRFGGEFL
DEINDYLTRS
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