Gene Shew_3459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3459 
Symbol 
ID4923384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4142746 
End bp4144482 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content59% 
IMG OID640165081 
Productpeptidoglycan glycosyltransferase 
Protein accessionYP_001095584 
Protein GI127514387 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0768] Cell division protein FtsI/penicillin-binding protein 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0440693 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC AGGCGAAACG TAAACAGAAA CCACAGCTGA TCCACTGGCG TCTCTACGTC 
GTGGTCGGTT TCGTGTGTCT GCTGTTTACC AGCCTGGTGG GCCGCGCCGC CTATATTCAG
ATCATAGAGC CTGAAAAACT GCGTCACGAG AGTGACATGC GCACCCTGCG TACCACGAGT
AACGAGGTGC ACCGTGGCAT GATCACCGAC CGTAACGGTG AGATGCTGGC GGTGAGCGTA
CCCGTCAAGG CGGTCTACGC CGATCCTAAG GTGGTGCACG ATCGTAACGG CTTCGCCGAT
ATGCGCCGCT GGCAGGCGCT GGCCGACGTG CTGCACGAGC CCAAGGAGGA GATCCTGGCG
CGAGTGCAGA CTAACCCCAA GAAACGTTTT ACCTACTTAA AGCGTCAGGT TACACCTGCG
GTGGCCGAGT ATATCAAGCA GCTTAAGCTG CCCGGCGTCT ACCTCAAGGC CGAATCGCGC
CGCTACTATC CTACCAGTGA GATCAGCGCG CAGCTGGTGG GCCTGACCAA TATCGACGAT
AAGGGCATCG AAGGGATCGA GAGCACCTAC AACGACTGGC TCACAGGTAC GCCCACCAAA
CATAAGGTAC GTAAGTCCCG CGACGGTCAC GTGGTCGAGC GTCTGGATAC GGTACAGACC
GGCGAGAGCT CTAACGATCT AGTGCTGAGT ATCGATCAGC GCATTCAGCA GCTGGCCTAC
CGCGAGATCA AGCGCGCCAC CGAGATCAAT CAGGCTACCT CGGCCTCTAT CGTGGTGCTC
GACGTGCACA CCGGCGAGGT GTTGGCCATG GCTAATACCC CCAGCTACAA CCCTAACTCC
CGGGATAACC TGCAAAGCTA TCGCATGCGT AACCGGGCCC TGACCGACGC CTATGAGCCG
GGTTCCACCA TCAAGCCCTT CGTGGTCGCC GCGGCGCTCG AGGCCGGCAC CATCAAGGAA
GATCAGATCT TCAAAACACA TCCGGGCCGC GTGCGTATCG GCGGCAAGAT AGTGCGCGAC
GGTCGCAACT ATGGCGACAT GTCTCTCGGT GATGTCTTGG TGCATTCCAG TAACGTGGGG
ATGACACAGA TCGCTTTGTC TATGCCGGTA CAGGAGCTGC TGGGTTACTA TCAGGCCATG
GGGCTGGGTA ACTATTCTGG CATCAACCTG CCGGGCGAGA GCGCCGGTCT TATTCACGAC
CGTCGACGTT GGTCCGATTT TGAGCGGGCA ACTCTCTCCT TCGGTTATGC CCTGACCGTC
ACACCACTGC AGATCGCCCG CATGTACGCC ATGTTGGGTA GCGGCGGCGT GCTTTATCCC
TCATCGATCC TCAAGCTGAA GAAGGAGCCC GAGGGCGAGC AGGTGATCTC TCCCGAGGTG
GCCCGCAGCG TGATGCAGAT GCTGATCGGG GTAACCGAGC CAGGCGGCAC GGCCAAGAAG
GCCCATATCG ACGGCTACCC GGTTGCGGGT AAGACGGGTA CCGCCCGTAA GGCCGTGGCC
GGTGGCTATG GTGAAGATTA TGTCGCCCTG TTTGCCGGGG TCGCGCCCGT ACACAATCCG
AGACTCGCCA TGGTGGTGGT AGTCAATGAG CCCAAGGGCG ATCGTTATTA TGGCGGCGAT
GTGGCCGCTC CCGTGTTTGC CAAAGTGATG TCAGGGGCAC TACAGATGTT AAATGTTGAG
CCGATCAGCG CTCGAGAAAA AGTTCAATTG GCCGGTAATG TCAGGAGGGG CGAATAA
 
Protein sequence
MSKQAKRKQK PQLIHWRLYV VVGFVCLLFT SLVGRAAYIQ IIEPEKLRHE SDMRTLRTTS 
NEVHRGMITD RNGEMLAVSV PVKAVYADPK VVHDRNGFAD MRRWQALADV LHEPKEEILA
RVQTNPKKRF TYLKRQVTPA VAEYIKQLKL PGVYLKAESR RYYPTSEISA QLVGLTNIDD
KGIEGIESTY NDWLTGTPTK HKVRKSRDGH VVERLDTVQT GESSNDLVLS IDQRIQQLAY
REIKRATEIN QATSASIVVL DVHTGEVLAM ANTPSYNPNS RDNLQSYRMR NRALTDAYEP
GSTIKPFVVA AALEAGTIKE DQIFKTHPGR VRIGGKIVRD GRNYGDMSLG DVLVHSSNVG
MTQIALSMPV QELLGYYQAM GLGNYSGINL PGESAGLIHD RRRWSDFERA TLSFGYALTV
TPLQIARMYA MLGSGGVLYP SSILKLKKEP EGEQVISPEV ARSVMQMLIG VTEPGGTAKK
AHIDGYPVAG KTGTARKAVA GGYGEDYVAL FAGVAPVHNP RLAMVVVVNE PKGDRYYGGD
VAAPVFAKVM SGALQMLNVE PISAREKVQL AGNVRRGE