| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3458 |
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| Symbol | murE |
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| ID | 4923383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4141280 |
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| End bp | 4142746 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165080 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
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| Protein accession | YP_001095583 |
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| Protein GI | 127514386 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.040004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCTAT GCGATCTCCT AGCCCCCTGG TTTCATTATG CCGGTGGCGA GTCCCTCAGC
CATCTGACGC TGGATAGTCG AGAGATAGGC CAGGGCAGCG TGTTTGTCGC CGTGCCTGGT
CACAGGGTCG ATGGCAGAGA CTATGTCGAT ACCGCCCTGT CGCAAGGAGC CGTAGCGGCA
CTTATTCATA CCGACGACCC GGCAGAGCAT GGCAAGGTGA GTCAGGACAA TGGCCTGCGT
ATCTATTTCT TTCAGCTGCA GCGTCAGCTG TCGGCGCTCG CCTCTCAGCT CTATGTGTTG
GGACGGGATA GGATCAAGCT GATCGGCGTG ACCGGCACCA ATGGTAAGAC ATCCGTAACC
CAACTTATCG CTCAGCTAAG CGACGGTCTG GGCAAGCCGG CCGCCGTCAT GGGCACCCTA
GGTAATGGCC TGTGGGGCCA GCTGGTCGAC AGCGGTAATA CCACGGCGGA TCCCATTACC
GTGATGCGCC AGCTAGAAGA TTTTGACCGC CAGGGCACCG CCGTGTGCGC CATGGAGGTG
TCCAGCCATG GCTTGGTGCA GGGGCGCGTA GACGCAGTGC CTTTCGATGT GGCCGTGTTT
ACTAACTTGA GTCGGGATCA TCTGGATTAT CACGGTTCTA TGGATGCCTA TGGCGCGGCT
AAGCAGCGCC TGTTTAGATT CAGTTCACTG AGCCACGGCT TGATCAACCT AGACGACCCT
GTTGGGCGTC AGTGGATCCA GGATAAACGC TGCAAGGGCT TGGTGGGCTT TAGTATTCAA
GGCCAGGAAG GCGCTGCTAT CTATACCAAA GAGGTCAAGC AGCATAGCCA AGGCGTTAGC
GCGACCTTAG TCTGGCCCGA AGGCGAGGCG AAGATCGACT CGCCCCTGCT GGGTATCTTC
AACCTGTCTA ACTTAGTCGC GGCCTTGGGC GCCCTCTATC TGAGCGGCTA CGCCATGGCG
CAGCTGTTGA CTCAGGTGTC CAGCCTCAAA CCTGTGGCGG GACGCATGGA GCGTTTCACC
ACGCAAGAAG GTGTCACCCT GGTGGTGGAT TACGCCCACA CGCCGGACGC CATAGAGCAG
GCGCTGCGAG CCCTGCGTGG TCACTGCCGC GGCAAGCTGT GGTGTGTCTT TGGCTGTGGC
GGCGACCGTG ACAAGGGCAA GCGGCCCTTG ATGGCCCGCG CCGCCGAGGA GAATGCCGAC
TGCGTCATGG TGACCAGCGA CAATGCTCGC AGCGAAGATC CCATGGCGAT CATTCAAGAT
GTATTGGCCG GACTCAACAA GCCGCAGATC GCCCTGACTC AGGTCGATAG ACAACAGGCG
ATCCGCGAGG TGGTGACCCT GGCCTCCAAC GGCGACCTCA TTTTGCTGGC CGGTAAGGGT
CATGAGACCT ATCAGGAGAT CGCCGGCAAA CGCCTGGATT ATGATGAACG CGCCCTGGCG
GCGGCAATTG CGAGGGGCGG CAAATGA
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| Protein sequence | MHLCDLLAPW FHYAGGESLS HLTLDSREIG QGSVFVAVPG HRVDGRDYVD TALSQGAVAA
LIHTDDPAEH GKVSQDNGLR IYFFQLQRQL SALASQLYVL GRDRIKLIGV TGTNGKTSVT
QLIAQLSDGL GKPAAVMGTL GNGLWGQLVD SGNTTADPIT VMRQLEDFDR QGTAVCAMEV
SSHGLVQGRV DAVPFDVAVF TNLSRDHLDY HGSMDAYGAA KQRLFRFSSL SHGLINLDDP
VGRQWIQDKR CKGLVGFSIQ GQEGAAIYTK EVKQHSQGVS ATLVWPEGEA KIDSPLLGIF
NLSNLVAALG ALYLSGYAMA QLLTQVSSLK PVAGRMERFT TQEGVTLVVD YAHTPDAIEQ
ALRALRGHCR GKLWCVFGCG GDRDKGKRPL MARAAEENAD CVMVTSDNAR SEDPMAIIQD
VLAGLNKPQI ALTQVDRQQA IREVVTLASN GDLILLAGKG HETYQEIAGK RLDYDERALA
AAIARGGK
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