| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3457 |
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| Symbol | |
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| ID | 4923382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4139913 |
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| End bp | 4141283 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640165079 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001095582 |
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| Protein GI | 127514385 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0148083 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCAC TTAAACTGTC AGAGCTCGCC AAGGTACTGA ATGCCAAGCA TATCGGCGAC
GATTTAAGCG TCAGCAAGGT ATCGAGCGAT AGCCGGGTGG TGGATGCACA GACTCTGTTT
GTCGCCTTAA AAGGTGAACG TTTCGATGCC CACGATTTTG CGGCCAAGGC GGTGATGGAT
GGCGCCAGCG CCCTGCTGGT GGAGCGTGAA CTACCGATTG CCGCGCCGCA ACTCATAGTG
GCTAACAGCC AGAAAGCCAT GGGCCAGATT GGTGCCCATG TGAAGCAGTG CGTCGCGCCC
AAGAGCGTGG CCCTGACCGG CTCGAACGGC AAGACCAGCG TCAAGGAGAT GGTGGCGACT
ATATTGTCGA CCCAGCATCA GGTGCTCTAT ACCGCGGGCA ACTTCAACAA CGAAGTCGGC
GTGCCCCTGA CCCTGCTGCG CCTCGAGCCG CAACACGAAT ATGGCGTGTT CGAACTGGGT
GCCAATCATC TCGGTGAGAT TAATTACACT TCATCTTTAG TGCAACCCGA TGTGGCGATG
GTTAATAATG TCGCCTCGGC GCATTTAGAG GGTTTTGGCT CGCTCGAAGG CGTGGCTAAG
GCCAAGTCTG AGATCTTCCT CCACCTGGCT AAGGATGGCG TCGCCGTGAT CAACGCAGAC
GACGCATTTG CCGATGTGAT GCGCCGCGCG GCCGCTAGCC ATACCCAGTT GAGTTTTTCA
TCCCAGGGGA ATCCTGCAGA TGTCAGCGCC GATGAGCTCA GCGCCGACGC CTTGGGCTGT
TATCGCTTTC GAATCGCGTA TCTGGATGAG CAGCGTACCG TCAGCCTGCC GTTGTCGGGC
CGTCATCAGG TGAGTAACGC CCTGGCGGCG ACCAGCATCT GTTTGGCGCT GGGATTGTCG
CTGGATGAGA TAGTTCAAGG GCTTATGCGG TTACAACCCG TGAAGGGGCG TATGCAGCCG
ACGCGTCTGG GACGTTTCTT GCTGATAGAC GACACCTATA ACGCCAATCC GGCCTCGGTG
GGAGCGGCAA TCGACTGGCT TCAAGAAATT GAAGGAAATC GCTGTTTAGT GCTGGGCGAT
TTGGGCGAAT TAGGTGACAA TGCGTCCCTT TTACATCGGC AGCTGGGCGA GAAGGCCAAG
CAGCAGGGGA TCGATGCCTT GTATTCACTG GGAGAGTTGA GTCGGGCGAG TAGCGAAGCT
TTCGCCGGCA AGCATTTCAC CGACTTAGAT GCATTGGTTG TTGATTTAGT TAGTTATTTT
AACCAGTTAA CCGGCAAGGT GACTGTGTTA GTTAAGGGGT CTCGAAGCGC CAGAATGGAG
CGGGTTGTCG AGGCCCTCAT TGCCGCCTTT GAGCGCAAGG AGTTGTTTTA A
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| Protein sequence | MIPLKLSELA KVLNAKHIGD DLSVSKVSSD SRVVDAQTLF VALKGERFDA HDFAAKAVMD
GASALLVERE LPIAAPQLIV ANSQKAMGQI GAHVKQCVAP KSVALTGSNG KTSVKEMVAT
ILSTQHQVLY TAGNFNNEVG VPLTLLRLEP QHEYGVFELG ANHLGEINYT SSLVQPDVAM
VNNVASAHLE GFGSLEGVAK AKSEIFLHLA KDGVAVINAD DAFADVMRRA AASHTQLSFS
SQGNPADVSA DELSADALGC YRFRIAYLDE QRTVSLPLSG RHQVSNALAA TSICLALGLS
LDEIVQGLMR LQPVKGRMQP TRLGRFLLID DTYNANPASV GAAIDWLQEI EGNRCLVLGD
LGELGDNASL LHRQLGEKAK QQGIDALYSL GELSRASSEA FAGKHFTDLD ALVVDLVSYF
NQLTGKVTVL VKGSRSARME RVVEALIAAF ERKELF
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