Gene Shew_3456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3456 
SymbolmraY 
ID4923381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4138831 
End bp4139913 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content55% 
IMG OID640165078 
Productphospho-N-acetylmuramoyl-pentapeptide- transferase 
Protein accessionYP_001095581 
Protein GI127514384 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 
TIGRFAM ID[TIGR00445] phospho-N-acetylmuramoyl-pentapeptide-transferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0139404 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGTTT ATCTGGCTGA GTATCTAACC CAGTTTTATA CCGGGTTTAA CGTTTTCTCA 
TATGTGACCT TCAGGGCGAT CCTGGGGCTG TTGACCGCCA TGGTGTTTAG CCTGTGGTGG
GGACCCAAGA TGATCGAGCG TCTGCAACTG CTGCAGATAG GTCAGGTGGT CCGTAATGAA
GGACCCGAGT CGCATTTTGC CAAGCGAGGC ACACCGACCA TGGGTGGCCT GTTGATCTTG
GCCGGCGTCT TTATCAGCGT ATTGCTGTGG GGCGATCTGG GTAGCCGCTA CGTGTGGGTC
ATGCTCTTCG TGCTGGGCGC CTTCGGCCTT ATCGGCTTTA TCGACGATTA TCGCAAGGTA
GTGCGCAAGG ACACCAAGGG GCTTATCGCG CGCTGGAAGT ATATCTTGCA ATCCCTGGCT
GCCTTGGCCA TCGCCTTCTA TCTGTACGCC TCGGCGGGCA GTGAAGGCGA AACCCAACTG
GTCTTGCCCT TCTTTAAGGA TGTGATGCCA CAGCTGGGCG CCTTCTTCAT CCTGCTGGCT
TACTTCACCA TAGTAGGTTC GAGCAACGCG GTGAACCTGA CCGATGGTCT GGATGGTCTG
GCGATTATGC CGACCGTGAT GGTAGCTGCT GCTTTTGCGT TGATCGCCTA TCTGTCTGGC
CACGTGCAGT TTGCCAACTA CCTGCATATT CCTTATCTGC CTGGCTCGGG CGAGCTGGTG
ATCGTCTGTA CCGCCATCGT CGGTGCGGGA TTGGGCTTTT TGTGGTTCAA CACCTATCCG
GCCCAGGTCT TCATGGGTGA CGTGGGCTCC CTTTCTCTGG GGGCGGCATT GGGCACCATC
GCCGTGTTGG TGCGTCAGGA GATCCTATTG GTGATCATGG GGGGCGTTTT CGTGATGGAG
ACAGTTTCTG TGATCCTGCA GGTCGGCTCC TATAAGCTGC GCGGTCAACG TATCTTCAGG
ATGGCACCCA TCCATCACCA CTACGAGCTG AAAGGTTGGC CCGAGCCCAG GGTGATCGTG
CGTTTCTGGA TCATCTCCCT CTTCCTGGTG TTGCTAGGCT TAGCAACCTT AAAGTTAAGG
TAA
 
Protein sequence
MLVYLAEYLT QFYTGFNVFS YVTFRAILGL LTAMVFSLWW GPKMIERLQL LQIGQVVRNE 
GPESHFAKRG TPTMGGLLIL AGVFISVLLW GDLGSRYVWV MLFVLGAFGL IGFIDDYRKV
VRKDTKGLIA RWKYILQSLA ALAIAFYLYA SAGSEGETQL VLPFFKDVMP QLGAFFILLA
YFTIVGSSNA VNLTDGLDGL AIMPTVMVAA AFALIAYLSG HVQFANYLHI PYLPGSGELV
IVCTAIVGAG LGFLWFNTYP AQVFMGDVGS LSLGAALGTI AVLVRQEILL VIMGGVFVME
TVSVILQVGS YKLRGQRIFR MAPIHHHYEL KGWPEPRVIV RFWIISLFLV LLGLATLKLR