Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3452 |
Symbol | murC |
ID | 4923377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4133744 |
End bp | 4135198 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640165074 |
Product | UDP-N-acetylmuramate--L-alanine ligase |
Protein accession | YP_001095577 |
Protein GI | 127514380 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000273756 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATTAAAA CCGAAGAGAA GTACGCCCAA TTAAGAACCA TCATTCCAGA GATGCGTCGC GTTAAGCGGA TCCACTTTGT GGGGATCGGC GGCGCGGGTA TGGGCGGTAT TGCCGAGGTC TTGGTAAACG AAGGTTATCG TCTTAGCGGT TCCGACATCG CCGAGAATGC CGTGACGGCG CGCCTGAAGC GCCTTGGCGC GGCGATCTTC ATCGGTCACA GCGCCGATCA GGTCGAGGGC GCCGATGTGG TGGTGGTCTC GACGGCCATC GATGCCAGTA ACCCAGAGAT TTTAGCGGCC CAGGAGCGAC GCATCCCCAT CGTTCGCCGG GCAGAGATGT TGGCCGAGCT GATGCGTTAT CGCCACGGTG TGGCGGTGGC CGGTACCCAT GGCAAGACGA CCACTACCAG CCTGATCGCC AGCGTCTATG GTCAGGCCGA GCGGGATCCG ACCTTCGTGA TCGGCGGCCT GCTGAACAGT GCCGGCACCA ATGCCCGTTT GGGTAAGAGC CGTTACCTGA TCGCCGAGGC CGATGAGAGC GATGCCAGCT TCCTGCATCT GCAACCCATG GTGAGTGTGG TCACCAACAT CGAAGCCGAC CACATGGATA CCTATGAGGG AGATTTCGAG AAGCTGAAAT CCACCTTCGT CGATTTCCTG CATAACCTGC CGTTCTACGG CGTGGCCGTG GCCTGTATCG ACGATCCCGT GGTGAGAGAG ATACTGCCCC GCATCGGCCG TAAGGTAGTG ACCTATGGTT TTAGCGAAGA TGCCGACGTG CAGGCGCTTA ACTTCGAGCA GCAGGGTTAT AGCTCACGCT TTACCGTGCG CCGTGAAGGG ATGGCAGATC TGGACCTGAG GGTTAATCTG CCGGGTCGTC ACAATGTGCT CAATGCCCTG GCGGCCATAG CCGTGGCCAC AGAAGATGAG ATTGAAGATG AGGCGATCAT CCGCGCACTG GATGAGTTCC AGGGCATAGG TCGTCGCTTC CAGCAGCTGG GTGAGTTCAC TACCACAGCT GGCGAGGTGA TGCTGGTCGA TGACTATGGT CATCACCCCA GCGAGGTGGC GGCAACCATC AAGGCGGCGC GTTCCGGCTG GCCGGATAAG CGTCTGGTGA TGATCTATCA GCCACACAGA TATAGCCGCA CCCGGGATCT CTATGACGAT TTCGTCGAGG TGCTGGCTCA GGTGGACTGC CTGTTACTGC TCGATGTTTA TAGCGCCGGA GAGGCGCCAG TACCCGGTGC AGACAGCCGC GCCCTGTGCC GCTCGATTCG TCAGCGTGGC CAGCTAGATC CTATCTTCGT GGCCGAGCCC GAGCAGTTAC AGACGATATT GCCTGGGGTG TTGCAGGGGG GCGATCTGCT GCTGACCCAA GGGGCAGGCA ATATCGGCGC CCTGAGTCGT CAGCTGGCCG ATGCCGGTCT GCAGTTTGAG TCGGAAAACC AATGA
|
Protein sequence | MIKTEEKYAQ LRTIIPEMRR VKRIHFVGIG GAGMGGIAEV LVNEGYRLSG SDIAENAVTA RLKRLGAAIF IGHSADQVEG ADVVVVSTAI DASNPEILAA QERRIPIVRR AEMLAELMRY RHGVAVAGTH GKTTTTSLIA SVYGQAERDP TFVIGGLLNS AGTNARLGKS RYLIAEADES DASFLHLQPM VSVVTNIEAD HMDTYEGDFE KLKSTFVDFL HNLPFYGVAV ACIDDPVVRE ILPRIGRKVV TYGFSEDADV QALNFEQQGY SSRFTVRREG MADLDLRVNL PGRHNVLNAL AAIAVATEDE IEDEAIIRAL DEFQGIGRRF QQLGEFTTTA GEVMLVDDYG HHPSEVAATI KAARSGWPDK RLVMIYQPHR YSRTRDLYDD FVEVLAQVDC LLLLDVYSAG EAPVPGADSR ALCRSIRQRG QLDPIFVAEP EQLQTILPGV LQGGDLLLTQ GAGNIGALSR QLADAGLQFE SENQ
|
| |