| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3445 |
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| Symbol | |
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| ID | 4923721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4125120 |
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| End bp | 4127843 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165067 |
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| Product | preprotein translocase subunit SecA |
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| Protein accession | YP_001095570 |
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| Protein GI | 127514373 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000355256 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000512951 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGGTA AATTACTGAC AAAAATATTT GGTAGTCGTA ACGATCGCAC CCTAAAAACT
CTCGGTAAGA TTGTCACAAA GATTAATGCC CTCGAAGCGG ATTTTGAGAA GTTTTCCGAC
GAGGAACTCA AGGCCAAGAC GGCCGAGTTT AAGCAGCGAT TGGAATCGGG CCAGACGCTG
GACGACGTCA TGCCGGAAGC CTTTGCCGTA GTGCGCGAAG CCTCTAAGCG TGTGTTTGAG
ATGCGCCACT TCGACGTGCA GCTGCTGGGT GGTATGGTGC TCGATAGTAA CCGTATCGCC
GAGATGCGTA CCGGTGAAGG TAAGACGCTG ACCGCAACAC TTCCTGCCTA CCTAAATGCC
CTGACCGGCA AAGGGGTTCA CGTGATCACA GTGAACGACT ACCTTGCCCG TCGTGACGCG
GAAAACAATC GCCCTCTATT TGAGTTCCTG GGTATGACTG TCGGCGTGAA CATCGCCGGT
ATGGGTCAGG CCGAGAAGAA GATGGCCTAC GCGTCTGACA TTACCTATGG TACCAACAAC
GAATTTGGTT TCGATTACCT GCGCGACAAC ATGGCATTTT CGCCTAACGA GCGCGTGCAG
CGCCCACTGC ATTATGCACT GATCGATGAG GTCGACTCGA TTCTGATCGA TGAGGCGCGT
ACGCCATTGA TCATCTCGGG CGCCGCAGAA GACAGCTCTG AGCTTTATAT CAAGATCAAC
ACCCTGATCC CTCACCTTAT CCGTCAGGAC AAGGAAGATA CTGAGGAAGA GATCGGCGAT
GGCGATTACT CTATTGATGA GAAGGCAAAG CAGGTTCACA TGACGGAGCG TGGTCAAGAG
AAGGTAGAAG TCCTGCTGAC CGAACGTGGC ATGTTGGCCG AAGGCGATTC GCTTTACTCT
GCGGCTAATA TCTCACTGCT GCATCATGTC AACGCGGCGC TACGTGCCCA TACCCTGTTT
GAAAAAGATG TCGACTACAT AGTACAAGAC AACGAAGTGA TCATCGTCGA TGAGCACACG
GGTCGTACCA TGCCGGGTCG TCGCTGGTCG GAAGGTCTGC ACCAGGCGGT AGAAGCCAAA
GAAGGGGTTC ATATTCAAAA TGAAAACCAG ACGCTGGCAT CTATCACCTT CCAGAACTTC
TTCCGTCAGT ACGAAAAACT GGCCGGTATG ACAGGTACTG CCGATACCGA AGCGTTCGAA
TTCCAACACA TCTATGGCTT GGATACCGTA GTTATCCCGA CCAACCGTCC TATGGTACGT
AAGGACCATG CGGATCTGGT CTACCTGACG GCGGAAGAGA AGTACGATGC CATCATCAAA
GACATCATAG ATTGTCGAGA CCGTGGCCAA CCTGTATTGG TGGGTACTGT CTCTATTGAA
CAATCTGAGC TGCTCCATAG CATGCTCAAG AAGGCGAAGA TCCCTCACGA GGTACTTAAC
GCTAAGTTCC ACGAGCGTGA AGCCGAGATC GTTGCCCAAG CGGGTCGCAG TGGCGCGGTG
ACCATCGCAA CTAACATGGC CGGTCGTGGT ACCGATATCG TGTTAGGCGG TAACTGGAAC
ATGGAGATCG ATGCCCTCGA GAACCCAACT GCCGAGCAGA AAGCCAAGAT CAAGGCCGAT
TGGCAGGTGC GCCACGACGA AGTGGTGGCC GCTGGCGGTC TGCATATTCT CGGTACCGAG
CGTCATGAGT CGCGTCGTAT CGATAACCAG CTACGTGGCC GTTCGGGTCG TCAGGGTGAT
GCAGGTTCAT CACGCTTCTA TCTGTCGATG GAAGACAGCC TGATGCGTAT CTTCGCCTCT
GAGCGTGTTT CATCTATGAT GAAGAAGCTT GGTATGGAGA AAGGTGAAGC GATCGAGCAT
CCATGGGTAT CCCGCGCGAT TGAAAACGCC CAGCGTAAGG TTGAGGCACG TAACTTCGAT
ATTCGTAAGC AACTGCTGGA ATTCGATGAC GTGGCCAACG ACCAACGTCA GGTAGTCTAT
GCTCAGCGTA ACGAGTTGAT GGATGCCGAG AGCATTCAAG ACACTATCGT GAACATCCAG
GCCGATGTGG TTAACGGCCT TATTGATCAG TACATTCCAC CACAATCGGT TGAAGAGCTG
TGGGACATTG CCGGCTTAGA GACACGTCTC GAGCAAGAGT ACGCGTTAAG AATGCCTGTT
CAGGAGTGGT TGGATAAGGA AGATGACCTG CACGAAGAGA CGCTGCGTGA GCGTATCGTC
GAGATCTGGG TAAAGGCATA TAAGGCTAAA GAAGAGATGG TCGGTGCCCA GGTGCTACGT
CAATTCGAGA AAGCCGTGAT GTTGCAGACC CTGGATGGCC TGTGGAAGGA GCATCTGGCG
GCGATGGATC ATCTGCGTCA GGGGATCCAC CTACGTGGCT ATGCGCAGAA GAATCCTAAG
CAAGAGTATA AGCGTGAGTC TTTCGAGCTG TTCCAGCAGA TGTTGGAATC TTTAAAACAT
GACGTGATCA GCATTCTCTC AAAGGTACAG GTTCAGGCTC AGTCTGATGT CGAAGAGATG
GAAGAGCGTC GTCGCCAGGA AGAAGCTAAG GTGCGTCGCG ATTATCAGCA CGCCGAGGCT
GAAGCCCTCG TTGGCGCAGA AGAGGCGCAA GCCTTGGCCG CTACTCAGCC AGTGGTGCGT
GAGGGGGAGA AGGTTGGCCG TAACGATCCT TGCCCTTGTG GTTCGGGACG TAAGTATAAG
CAGTGCCACG GCAAGTTGAG TTAA
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| Protein sequence | MFGKLLTKIF GSRNDRTLKT LGKIVTKINA LEADFEKFSD EELKAKTAEF KQRLESGQTL
DDVMPEAFAV VREASKRVFE MRHFDVQLLG GMVLDSNRIA EMRTGEGKTL TATLPAYLNA
LTGKGVHVIT VNDYLARRDA ENNRPLFEFL GMTVGVNIAG MGQAEKKMAY ASDITYGTNN
EFGFDYLRDN MAFSPNERVQ RPLHYALIDE VDSILIDEAR TPLIISGAAE DSSELYIKIN
TLIPHLIRQD KEDTEEEIGD GDYSIDEKAK QVHMTERGQE KVEVLLTERG MLAEGDSLYS
AANISLLHHV NAALRAHTLF EKDVDYIVQD NEVIIVDEHT GRTMPGRRWS EGLHQAVEAK
EGVHIQNENQ TLASITFQNF FRQYEKLAGM TGTADTEAFE FQHIYGLDTV VIPTNRPMVR
KDHADLVYLT AEEKYDAIIK DIIDCRDRGQ PVLVGTVSIE QSELLHSMLK KAKIPHEVLN
AKFHEREAEI VAQAGRSGAV TIATNMAGRG TDIVLGGNWN MEIDALENPT AEQKAKIKAD
WQVRHDEVVA AGGLHILGTE RHESRRIDNQ LRGRSGRQGD AGSSRFYLSM EDSLMRIFAS
ERVSSMMKKL GMEKGEAIEH PWVSRAIENA QRKVEARNFD IRKQLLEFDD VANDQRQVVY
AQRNELMDAE SIQDTIVNIQ ADVVNGLIDQ YIPPQSVEEL WDIAGLETRL EQEYALRMPV
QEWLDKEDDL HEETLRERIV EIWVKAYKAK EEMVGAQVLR QFEKAVMLQT LDGLWKEHLA
AMDHLRQGIH LRGYAQKNPK QEYKRESFEL FQQMLESLKH DVISILSKVQ VQAQSDVEEM
EERRRQEEAK VRRDYQHAEA EALVGAEEAQ ALAATQPVVR EGEKVGRNDP CPCGSGRKYK
QCHGKLS
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