| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3436 |
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| Symbol | |
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| ID | 4923450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4103142 |
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| End bp | 4103495 |
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| Gene Length | 354 bp |
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| Protein Length | 117 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640165048 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001095561 |
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| Protein GI | 127514364 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000000382695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.231722 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGGTA TCAAGAAGAC TAACGCTAAG GGTTTCACCC TGATTGAATT AATGATCGTT
GTTGCAATCA TCGGTATTCT CGCCGCAATT GCACTGCCTG CTTACAAAGA GTATGTAAAC
AAAGGTAAGA TCAATGCCTG CCTAGGCGAA GCGACTGCCT ATGTTAAAGC TGCATCAGCT
GCGGTAATTG GTGAAACAAC AATTCCCGAT TTCGCTCCAA CCTCTTGTAC AGGGGCTATT
ACTAAGCCTA CAAACCTGGC CTCTCTGACA GGTACAGCAA CTACTAAAGC GCAAGACGAG
AACACCACAA CTATTAGTTG TGACTGGCCA ACGGCTACTT GTAAAGCATC TTAA
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| Protein sequence | MKGIKKTNAK GFTLIELMIV VAIIGILAAI ALPAYKEYVN KGKINACLGE ATAYVKAASA
AVIGETTIPD FAPTSCTGAI TKPTNLASLT GTATTKAQDE NTTTISCDWP TATCKAS
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