| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3432 |
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| Symbol | pdhR |
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| ID | 4923512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4098617 |
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| End bp | 4099369 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640165044 |
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| Product | transcriptional regulator PdhR |
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| Protein accession | YP_001095557 |
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| Protein GI | 127514360 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.517793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.595075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTATA GCAAAATCAA CCAGCCAAAA ATTTCTGACG TGATCATGAA TCAGCTGGAG
CAGATGATCC TGGAGGGGAG TCTGCAACCG GGTCAGAAAT TACCACCAGA GCGTGAATTG
GCACTGCAAT TCGAAGTCTC TCGACCATCT CTTCGTGAAG CAATTCAAAA GTTAGAAGCA
AAAGGCTTGC TGCTGCGTCG TCAAGGCGGT GGTACCTATG TCAAAGAGCA ACTTTGGCAG
AGTCTTGCCG ATCCTATTGT GGAGCTGATG CACAGCGATT CCGAGAGTCA GTATGATCTT
CTCGAGTTTC GTCACGCCAC TGAAGGCATG ATGGCTTACT TTGCGGCACT TCGGGGTACC
GATGCCGACA TGCAAAACAT CAAAGAAAAA ATCCAAGCGG TAGAAGCTGC GTCTGACATC
GAGGCGAAGG CAGAGGCGAT CGTGTGTTTT TATCGCGCCA TTGCCGAGGC CTCTCACAAC
GTGGCTATGC TGCACTTGGT ACTGAGTTTA TCTCCCGTGC TGCATAAGAA TGTGGCGCAA
AACCTAGAGT TGCTAAAGCG CAGAGCTGAT GCCTCTAAAA TGGCGAACGA GCATAGGCAA
GATCTTCTTG CCGCCATCGT GCGCCGTGAT CCCGAAGCCG CAAGAGAAGC CTCAAACGAG
CATCTAAGCT ACATTGAGGA AGTGATGTTG TCTGTGAGGG AAGAAGATAG CCGGTTGCAG
CGTAGTCTGC GCCGTTTGAA GAGTGGCGCG TAG
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| Protein sequence | MAYSKINQPK ISDVIMNQLE QMILEGSLQP GQKLPPEREL ALQFEVSRPS LREAIQKLEA
KGLLLRRQGG GTYVKEQLWQ SLADPIVELM HSDSESQYDL LEFRHATEGM MAYFAALRGT
DADMQNIKEK IQAVEAASDI EAKAEAIVCF YRAIAEASHN VAMLHLVLSL SPVLHKNVAQ
NLELLKRRAD ASKMANEHRQ DLLAAIVRRD PEAAREASNE HLSYIEEVML SVREEDSRLQ
RSLRRLKSGA
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