| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3428 |
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| Symbol | |
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| ID | 4923508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4087739 |
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| End bp | 4092193 |
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| Gene Length | 4455 bp |
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| Protein Length | 1484 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165040 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001095553 |
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| Protein GI | 127514356 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.978359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA CCCAGGCGTT ACGCTTACTA GGCTGTTTGC TTTTCATGAT TGGCTTTACC
GCGCCAAGTA TAGCGGGCGA TCTGGTACAG AGGGTCTTTA GCGCGCGGGA CGGCCTCAAC
AATGCCACGG TAAACGACAT CAGCTTCGAT GAGTATGGCT ATACCTGGCT CTCCACTGAG
CAGGGGCTGT ACCGCATCAG CGATACCAAG GCGCGGCGTA TCGATAAAGA CGCCAACCAT
ATCCGCCTCT CCGACGAATA TATCTATCTC ACCGAATCCC TGAGTAAGCA ACATCTGCTG
GTCAGCAGTT ATGCCAACAC CTACCTGTAT GACATAGTCA AAGATGAGTT TGTCCAGCTG
GGCAGCGACA AGCTGTTTCC CGAGTTTCAT CCCAGCGGGC TGCAGGCGGT CACCCGCCAG
AAAGATGGTA GCTATGTGCT GCTCAGCTAT GTCGGCGAGC TGTACCGACT CGATTATAAG
GCGATGACGC TCACCTTTAT CAGTGCCTTG CCGAGCGACC CGGATATGCC CTGGTTTGTG
CTGTCGCAAT TTGGCGATGC CCAGCTGATC GTTGGTAAGA GCTATGAGCT GCAGCTTAGA
GACAGCCTGG GGATGCTCAG AGGCATCTTC CCTTGGACCG AAGAGCAGGG CCAGATAAAG
AACCTGTTCG AAGACAGGGC GGGGCGTTTG TGGCTGGGCT CGAGCAACGG CCTGTATCGT
GTCTACCCGG ATTCGTTAAC CCTGGAGAAG GTAGAGCAGA TCCCCTTCTA CGTGACCCAG
ATGGCCCAGG ATAAGCTCGG CTTTCTGTGG CTGTCGGGGC GCGAGGGGCT GATCAAGTGG
CACCCGGACA CCCTTGAGAT AAAGCACTTT AGCAATGAAC TGAAACTGGC GGCGGATCTC
GACTACATCT ATGACCTGGC GGTGGACGAC AACGACCTGG TCTGGGTCGG TGGCTCGGGT
GATGGCCTGG CGATCATCGC CGACGATCCC GATTTCGTGC TGGACAACTT TACACGCAAC
GCCCCTTATC AGATTAGCAA CGAGATGATT TGGGGTATCT TTGCCGAGCA AAATAAGCTG
TGGTTGGGCA CAGACAAGGG GCTTATCGAG GTCGATCGCG ACGCCAAGAA GAGTGAGACC
TACCTGCCCG ATGAGATGGA GGTCAACGAC AGCGTCTACA CAGTTAGCGC GTTCGACAAG
CAGCGTCTGC TGCTGGGCAC CACCAATGGC CTGTTCATCT ACGACAAGCA GGCGCGCAAG
ACCATGCGTT TCGCCGAGAT CAGCGGTGGG CGCACCTCGC TCGAAAATAA GATGATCTAC
TTCAGCTACA AGGATCCTCT GATCACCTCG CGCTGGTGGT TCGTCACCGC CACAGGCCTG
TTCTACTGGG ACAAGGGGAG CCTGGAGCCG ACTCGCATGC AGGTCAAAGG CGTCGACGGT
ACCCTGCATC AGATCCCGCT GCGCTCTATC TACCGGGCGG CCGACGGCAA GCTATGGATC
GGCGGCGAGA ATCTGTTCGG CTATATCGAT AGCAAGGGGC TCTTCTATTC CCGCATCGAC
CTGTTCGCCG ACGACAACAT CTCAGTCGAC GTCAGCTATA TCAATGAGGT GGATTCGGGC
GTGCTCTGGC TCGGTACCTC GCCCAAGGGG CTGGTGGAGT ATCACCCCAA GACGGGCCTG
ACCTATTTTC TCACAGACAA CTGGCAGGTG GAGTGTAGCT CCGTCTATTT CATCGAGCAG
TTGCCGGGCT ATCGGGTGCT GGGCTGTGCC AACTCCTTGG TGAGGCAAGA TCTCACCACC
GGCGGGATCA CGGTTATCGA GAAGCAGGAC GGACTGATCA GTCACGAGCT CAACGATGGC
GCCGCCTTTT ATGAGCCAGG CGTCGGCCTC TATGTCGGTA GCCCCGACGG CGTGGCCTTG
GTGGATGTGC CCCAGATGCG TAACCGCCTG GCGGAAGATG GCATCATGAT GGAATCTGTC
TCCGTATTCT ACGAGGACAA CACGGAGACC AAGCTGGTGC CCGAGGCGGG CATGCTGATA
AAACCCGGCG CGCGCCTGAT CAGTTTCCAG CTGACCAGCC TCGACTATCT GACCGATATT
CCGTTTCAGC TGCAGTATCG TCTGCGCCGC GGCAAGGCGT CCGAGGAGAG CAAGTACTTA
CAGCTGATGG GCCAGTCCCA GGTCAACGTC TCGGGCCTCA AGGATGGCCA CTACACCTTA
GACATTCTCA GCGAGCAAAA CGGCGTCTGG TCGCAGACTC CCTATTCGTT CAGCTTCGTG
GTCGAAGACT ACTGGTGGAA CTACGACTGG TTCAGAGGCT TGCTACTGCT TTCGCTCTTG
CTGGTGGGGC TCTACTTCCT GCTGCTGCGT CAGAAACAGA TAGGTGCCTT CAGACGGGTC
AACAAGAAGC TCAAGGAGAG CGAGGACAGG CTGCGGCAAT CGCTGCGGGG CAGTGATTCA
GAGCTGTGGG AGTGGCACAG CGAGAGCGAA ACCTTCCTGC TGGAAAACCG TGGGGGCTAT
TTCCCCGACA GGGGCGATGC CTTCGAGCTT AAGATGGATG AGTTCCCCAT CTACGCCGAT
GACCAGGAAA AGGTATTTAC CGCCTGGAAA CGCCTGCTCT CGAAGCAGGA TGACAGGTTG
GATGTGGATT ATCGTTACCG CCGTCCCGAC GAGTCTTGGG GCTGGACCCG GGTACGCGGC
CGTGCATTGG AGTTCGATCC CGTTAGCGGC CGAGTGAAGA AGGTCGCCGG TATCTACACC
GACATTACTA CGCAGCGAAT GCTGGAAGAT GACGTTAAGC TGCTGGCTCA GGCGTTTGCC
AACACCTCGG AAGGGGTGCT GATCTTAGAC GCCGATGAGC GGGTGAGGGT CTCGAATAAG
GCGGCCCAGT CGATTCTGGG GATGAGCGCC GATGATCTTA TCGACAGATA CTTTGCCCAG
CTGGTTCACA GCAGCGAAGA CAGGAGCGAT GAGATCAACA TCCTGCTGGA GCAGGGCATC
ACCTGGACCG GCGAGCACGA GTTTCAGTGC GCCGAGGGGC TGATCTGCCC CGTGTGGCTG
AACCTGTCCA CCATGAAAGA TGATCGCGGC AACATCAGTC ATTATGTGGC GGTGTTCTCC
GATATCACTG AGCGTAAGCA GACCGAGGCG GACCTGCGCC GTCTGGCCAA CTATGACGTG
CTGACCGGTT TGCCCAACCG TTCCCTGTTC GCCGCGCGCC TGGCCAAGTG TATCCACCGC
GCCGAGCAGA CCGAAGATAA GCTGGCGCTG ATCTTCCTTG ACCTGGATCG CTTCAAGAAC
GTCAACGACT CCTACGGCCA CAGCATGGGC GACGCCCTGC TGGTGGAGGC CGCCAGCCGC
CTGCAATCCT GCGTGAGTGA AAACCACACC CTCTGCCGCT TCGGGGGCGA TGAGTTTGTG
ATTTTGATGC GCGACATGGT GGATATCGAC GAGGTTAACC ATCTGTGTGA GGCGCTGATC
CGCCAGATAG AGAAGCCCTT CGAGCTCTAC GGTCGTGAGT TCTTCATCTC CACCAGTATC
GGGGTCAGTC TATGGCCGGA TGATGCCAAA CAGCCCGAGG TGTTGATCAA GAACGCCGAT
CAGGCCATGT ATCACGCCAA GGAAGAGGGG CGCGGTAACT TCCAATACTT CTCGGCCGAG
CGTAACGCCG AGGCCCTGTA TCACCTCAAG TTAGAGGCCG AGCTGCGTAA GGCGATGGAC
AGGCAGGAGT TTGAGCTCTA CTTCCAGCCG CAGATCGATA TCCTCAAGGA CGACAAGGTG
GTGGGCATGG AGGCGCTGCT GCGCTGGCAT CACCCCAAGG AAGGTTATAT CCGTCCCGAT
ATCTTTATCC GGGTGGCGGA GTCATGCGGC CTGATCATAG AAATCGACCG TTGGGTGATA
AAGCAGGCCT GTCTGCAGGG CGCCAAGTGG GCCGAACATT TCGGCGACGA GTTGAAACTG
TCGGTCAACG TCTCTGCGGT GCACTTCAGG CAACCCGACT TTATTCAAGA TGTGCAGCAG
GCGCTCAAGG AGTCTGGCAT GCCGGCTAAG ATGCTGGGGC TGGAGATCAC CGAGGGCGTC
TTGATGAAAG AGCTGCATGT GGCCAAAGAT CACCTTAAGG CGCTACGGGA GATCGGCATA
GAGGTCGCGA TCGACGATTT CGGTACCGGC TACTCGTCGC TCGCCTATCT GCGCAGCTTC
GATGTCAGCA CGCTGAAGAT CGACCGCTCC TTCCTGATCG ATATCGCCAC TAACGAGGCG
GATCAGGCGA TCGCCAGCAG TATCATAGAG CTGGCCCGTA ACCTTAAGCT CAAGGTGGTG
GCTGAAGGGG TGGAGACCCA GGAGCAGTTA GAGCAGGTCT TTAGCCGTGG TTGTTACATC
ATTCAGGGCT ACTATTTTGC CAAGCCGATG ACCATAGATG AGTTTGAGAA ATACCTCTAC
ATTAAGTCTC AGTAG
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| Protein sequence | MSFTQALRLL GCLLFMIGFT APSIAGDLVQ RVFSARDGLN NATVNDISFD EYGYTWLSTE
QGLYRISDTK ARRIDKDANH IRLSDEYIYL TESLSKQHLL VSSYANTYLY DIVKDEFVQL
GSDKLFPEFH PSGLQAVTRQ KDGSYVLLSY VGELYRLDYK AMTLTFISAL PSDPDMPWFV
LSQFGDAQLI VGKSYELQLR DSLGMLRGIF PWTEEQGQIK NLFEDRAGRL WLGSSNGLYR
VYPDSLTLEK VEQIPFYVTQ MAQDKLGFLW LSGREGLIKW HPDTLEIKHF SNELKLAADL
DYIYDLAVDD NDLVWVGGSG DGLAIIADDP DFVLDNFTRN APYQISNEMI WGIFAEQNKL
WLGTDKGLIE VDRDAKKSET YLPDEMEVND SVYTVSAFDK QRLLLGTTNG LFIYDKQARK
TMRFAEISGG RTSLENKMIY FSYKDPLITS RWWFVTATGL FYWDKGSLEP TRMQVKGVDG
TLHQIPLRSI YRAADGKLWI GGENLFGYID SKGLFYSRID LFADDNISVD VSYINEVDSG
VLWLGTSPKG LVEYHPKTGL TYFLTDNWQV ECSSVYFIEQ LPGYRVLGCA NSLVRQDLTT
GGITVIEKQD GLISHELNDG AAFYEPGVGL YVGSPDGVAL VDVPQMRNRL AEDGIMMESV
SVFYEDNTET KLVPEAGMLI KPGARLISFQ LTSLDYLTDI PFQLQYRLRR GKASEESKYL
QLMGQSQVNV SGLKDGHYTL DILSEQNGVW SQTPYSFSFV VEDYWWNYDW FRGLLLLSLL
LVGLYFLLLR QKQIGAFRRV NKKLKESEDR LRQSLRGSDS ELWEWHSESE TFLLENRGGY
FPDRGDAFEL KMDEFPIYAD DQEKVFTAWK RLLSKQDDRL DVDYRYRRPD ESWGWTRVRG
RALEFDPVSG RVKKVAGIYT DITTQRMLED DVKLLAQAFA NTSEGVLILD ADERVRVSNK
AAQSILGMSA DDLIDRYFAQ LVHSSEDRSD EINILLEQGI TWTGEHEFQC AEGLICPVWL
NLSTMKDDRG NISHYVAVFS DITERKQTEA DLRRLANYDV LTGLPNRSLF AARLAKCIHR
AEQTEDKLAL IFLDLDRFKN VNDSYGHSMG DALLVEAASR LQSCVSENHT LCRFGGDEFV
ILMRDMVDID EVNHLCEALI RQIEKPFELY GREFFISTSI GVSLWPDDAK QPEVLIKNAD
QAMYHAKEEG RGNFQYFSAE RNAEALYHLK LEAELRKAMD RQEFELYFQP QIDILKDDKV
VGMEALLRWH HPKEGYIRPD IFIRVAESCG LIIEIDRWVI KQACLQGAKW AEHFGDELKL
SVNVSAVHFR QPDFIQDVQQ ALKESGMPAK MLGLEITEGV LMKELHVAKD HLKALREIGI
EVAIDDFGTG YSSLAYLRSF DVSTLKIDRS FLIDIATNEA DQAIASSIIE LARNLKLKVV
AEGVETQEQL EQVFSRGCYI IQGYYFAKPM TIDEFEKYLY IKSQ
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