| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3422 |
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| Symbol | hemE |
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| ID | 4923502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4077352 |
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| End bp | 4078416 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165034 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001095547 |
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| Protein GI | 127514350 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAC TAAAAAATGA TCGTTATTTA CGTGCCTTAC TAAAACAGCC TGTTGATGTG
ACTCCTGTGT GGATGATGCG TCAGGCGGGT CGTTACCTTC CTGAATACAA AGCAACCCGC
GCACAAGCCG GCGACTTCAT GTCACTGTGC CGCAATGCCG AGTTGGCCTG TGAGGTGACG
TTGCAACCAC TTCGTCGTTA CGATCTCGAT GCTGCGATCT TATTCTCTGA TATTTTGACC
GTGCCAGATG CCATGGGCCT GGGTCTCTAT TTCGAAACCG GTGAGGGTCC TCGTTTCGAG
CGTCCAACCG ATACGCTTGA TGCCATCAAG AAGCTGGCAG TGCCGGATCC AGAAGATGAG
CTTGGTTATG TGATGAAGGC CGTTAGCACC ATTCGCCGTG AGTTGAAAGG CGAAGTGCCG
CTGATCGGTT TCTCTGGTTC ACCTTGGACA CTGGCGACCT ACATGGTCGA GGGCGGTTCG
AGCAAGACTT TCGAGAAGAT CAAGAAGATG GCCTATGCCG AGCCTGCGGC GCTGCACATG
TTGCTAGACA AGCTGGCCGA TGCCGTGACC CTGTACCTGA ATGCACAGGT GGCCAACGGT
GCCCAGTCAC TGATGATTTT CGACTCATGG GGCGGCGCCC TGTCTCACAC CGCCTACCGC
GAGTTCTCGC TGCGCTACAT GCAGAAGATC GTCGACGGTC TGACCCGTCA TGCCGATGGT
CGTCAGGTGC CTGTGACTCT GTTCACTAAG GGTGGCGGAC TATGGCTAGA GGCGATGGCC
GAGACTGGCT GTGATGCACT GGGTCTGGAC TGGACAGTGG ACATTGCCGA CGCTCGTCGC
CGCGTGGGTC ACAAGGTTGC CCTTCAGGGT AACATGGATC CTTCTATGCT TTACGCTTCA
CCTGAGCGCA TCCACGAAGA AGTGCGTCAG ATCTTGGCCG GTTACGGCGA AGGTTCGGGC
CATGTATTCA ACCTGGGTCA TGGTATTCAC CAACATGTGG ATCCAGAGCA TGCCGGCGCC
TTCATCAAGT CAGTTCACGA ACTGTCGGCG CAATACCACA AGTAA
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| Protein sequence | MAELKNDRYL RALLKQPVDV TPVWMMRQAG RYLPEYKATR AQAGDFMSLC RNAELACEVT
LQPLRRYDLD AAILFSDILT VPDAMGLGLY FETGEGPRFE RPTDTLDAIK KLAVPDPEDE
LGYVMKAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYAEPAALHM
LLDKLADAVT LYLNAQVANG AQSLMIFDSW GGALSHTAYR EFSLRYMQKI VDGLTRHADG
RQVPVTLFTK GGGLWLEAMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAS
PERIHEEVRQ ILAGYGEGSG HVFNLGHGIH QHVDPEHAGA FIKSVHELSA QYHK
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