| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3420 |
|---|
| Symbol | |
|---|
| ID | 4923574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4075470 |
|---|
| End bp | 4076951 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640165032 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001095545 |
|---|
| Protein GI | 127514348 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAACA GCCTGTTTGG TCGCATCCTG CTGCTTACCA GCGCCTGTGT CTTGCTGCTG
TTTCTCGGCT TCTGGCAGTG GTCTAGCCTG AGTCAGCAAC ACAGCCAGCG GCTGGTGCAA
CAGTCCCTGC ACAGGGAACT GGCGACCCAC ATGGCCGAGA TCAACCCGCT GTTGTCACAG
GGAATCGCCT CGGACGCCGC CCTCAAGGAG GCCTTTCACG ACCTCATGTT GCTGGGGCCC
AGCTTCGAGA TCTACACCTT AGACACTCAA GGCAAGGTGG TCGCCTTCGA CGCCAGGGAG
GAGCAGATCA AGACCCACAG GGTGGACATC ACCAAGATTC ATTCCTTCCT CAAGGGGAAT
ACCCTGCCAA TCCTGGGCAC AGATCCCAGG AGTGATGGCC AGCAGAAGAT CTTCTCCGCC
AGCCCACTTA CAGGCCCAAA TGGTACCCTC AGCGGCTACC TCTATGTGAT CATAGGCGGC
GAAGCCTTCG ATAGTTGGCA GTCACTCATC CAGGCCAAAG ATCTGCCGGA GCGCTGGGGC
GTCGCCCTGG GTGGCTGGGC ACTGTTTACC CTGATCTTGT TTGCCCTGCT GCTGCGCTAC
CTGACCCGGC CCCTCAATCG CCTCACCCAG GCCCTGGGCG AGCTGGAACA CAAACCCATA
GATCAGCCCC TCGCCCTGCC CCTGGCGCCG AGCCGCAGCC AGGAGATGGC CCAGCTCAAT
GGGCAGATCA ATCGTCTGCT AGAAGAGGTA GCCCAGAAGC AGCGACAGGT CACGGCGCAG
CAGGCTGCCA AGCAGGAGTT CCTGCTGCAC CTGTCACACG ATCTCAAGAC GCCGCTCACC
ACCTTGCTGG GATACTTAGA TACCTGGCTG CTGAGCCCGG CCGATGCGCG CGACGACAGC
CTGCTGCAGT ACGCGGCCGC CTCGGGGCAG AAGCTACAGC AGCTGCTGGC GCAGATGCTC
GAGTTGGCGG CGCTGGAGAA CGGTCAGATC AAGGCGAACA TGCGCCGCGT CTCGCTGCAG
TCGATTCTCG ATGAACTCAA CCAGACCTTC ACCCCCAAGG CTAAGCGGGC CGAGGTCAGC
CTCCGCCTAG GCCAGGGTGA GAGTGAGGGC GAGAGTGAGT TCCTCTATAC GGATCCTCAG
CTCATGAGCC GGGTGCTCAA CAACCTGCTG GACAACGCCC TACGCCACAC ACCGCCAGGC
GGTGAGATAG CCGTCTATCC CCAGACGCTG GCCTCGGGAT CTTATCTGGT GATTCAAGAC
TCGGGCAGCG GCATGCAACC AGAAGCCATT GCCGCCCTGC AACATACTCC TAGCCCAAGC
CAACCCGAGC TCTACTATTG CCGGGGCGAA ACGCTGCCGC AGCTAGGCGT CGGCCTGGCG
ATCGTCAGGC AGCTATTGGC CAGACTCGGC TGTCGTATCG AGGTGCAGAG TGCAACCGAT
CGGGGCAGCC GATTCATGAT CGCACTGCCC CGATATCGAT GA
|
|---|
| Protein sequence | MVNSLFGRIL LLTSACVLLL FLGFWQWSSL SQQHSQRLVQ QSLHRELATH MAEINPLLSQ
GIASDAALKE AFHDLMLLGP SFEIYTLDTQ GKVVAFDARE EQIKTHRVDI TKIHSFLKGN
TLPILGTDPR SDGQQKIFSA SPLTGPNGTL SGYLYVIIGG EAFDSWQSLI QAKDLPERWG
VALGGWALFT LILFALLLRY LTRPLNRLTQ ALGELEHKPI DQPLALPLAP SRSQEMAQLN
GQINRLLEEV AQKQRQVTAQ QAAKQEFLLH LSHDLKTPLT TLLGYLDTWL LSPADARDDS
LLQYAAASGQ KLQQLLAQML ELAALENGQI KANMRRVSLQ SILDELNQTF TPKAKRAEVS
LRLGQGESEG ESEFLYTDPQ LMSRVLNNLL DNALRHTPPG GEIAVYPQTL ASGSYLVIQD
SGSGMQPEAI AALQHTPSPS QPELYYCRGE TLPQLGVGLA IVRQLLARLG CRIEVQSATD
RGSRFMIALP RYR
|
|---|
| |