| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3416 |
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| Symbol | |
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| ID | 4923570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4070305 |
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| End bp | 4072878 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165028 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001095541 |
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| Protein GI | 127514344 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.575595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATTA GCAAGAAAAT TGTGGTTTTT GTGGCCGGCT TCTGCCTGCC CGCCATCATG
GCCATCTCCT ATGGGTTAAA CGCCTGGTAT GAACTGCGCC TGAGCGATCT TCGCCAGGAG
ATGAGTCAGC GTGCTCAGCA GAATATCGCC CACCATCTCG AGGAAGATCT GGGGCAGTTT
GAGATGTTGG CCCAGCTCTA CGGCGTGCCC ATGGCGCTCT TGCCTGCCGA CCAGCGCCAG
ACCCTGTCGG CGACCTGGCA TGCCATGGCC CTGTCTGCCC ATGTCAGCCT CTACGGCGTA
GAGGACGATG GCATTCGCGC TTTTGCAGAG CCCAGCCCGG AAACCCTGGC TTTGGATCTC
GATGCGCTCT GGCCCGAACT CCTGAACCTG GATGGCGTTC GCACCGGTTT TCTGCTCCAG
GGCAAGCAGG GCTTTCTTGC CTGCGTGATC CCTCTGTCTG ACAACAGGCG TCTGCTGATG
GTGCGCCGGG TCGACAATCA ATTATTCGAA CACTATCAGG CTTATTCGTC GCTGGCGGGA
CTGAGGCTCG CGACCACCAC GCCGAGCCTG CTGGCGCAGA CATCGCCACA GCGGGTGACT
CTGGAGGTGC CAAGCCTGCT CGGTGACCAT TCGCTGCTTT TAGATATCGA GCTGACACAG
AGAGACAGCC TGGTGCAGAG CGGTCCGGCG ACCCTGGTCT ATCTCATCGG TGGCATCAGC
CTGTTGCTGT TGTTGCTGGG CTACCTCTGG CTGCGCCATG GGGTGGTCGA TCCCCTCAAG
CAGTTATTGC GTCAGCTCTC GCGGGTGGAT CCGACGGCGA AGACCTATCA ACCGATCCGG
GCCAAGGGCA CCTCAGAATT TATGGTGATC TCCGAGCAGG TCAACAGCCT GCTGGCGCGA
ATCTTCCAGC AGAAGGAGCG CTCCAAGATC ACCCTGGAGG CGATAGCCGA GGCGGTGATC
CTCACCGACA GCTGGGCCAA GGTGATCTAT CTCAATCCTC AGGCGGAGCG GCTGCTCAAG
GTGAAGGCCG AATCTGCTGT GGGGATGAAC CTGGATAAGG TGTTTCGCAG CGAGCCCGAG
CTGAATCAGT CGCTATTTGC CTTCATGGCG AGCGGCACGC CGACGCCCAT GCTGAGCAAG
GTCAAGTTTA CCAGCCATAC GCCCAGGCTG ATGGAGCGTA GCATCAGTAA CCTCAAGGGG
CCGAACAACA AGATCATCGG CACAGTGATC GTGCTGCGGG ACATTACCCA AGAGGAGCTG
CTCAAGCATC AGCTCAGACG CAGGGCAAAC TTCGATAATG TTACCGGCCT ACTCAATCGC
TGCGCCTTCG AGGAGCGATT ACAGGCCTTT GCCGAAGACG CCCAGACTCT GGCTATCTGC
TATTTCGACC TGGAGCAGTT TAAGCTGATC AACGACTCTT GCGGCCACAA CGCCGGCGAT
GCCATGTTGA AGATGGTGGC CAAGGCGATT CAGGCCAGCC TGGAGGGGCA GGGCTTGCTG
GCCCGCCTGG GCGGCGACGA GTTTGGCCTG GCGCTGAAAG ACTTAGGTGT GGTGCCACTG
GCTCAGCAGG TGAAACAGAT CATCAATGCC GTCGGCAAAC AGGTAATGGA GCATCACGGC
TGCCATTATC ATGTGGGGAT CAGCGCCGGG GTGGCATTGG CCAGGGCACC TTATATCAAT
GCGCTGGAGC TACTCAAAGA TGCCGATATC GCCTGTATCG CCGCCAAGCG CAAGGGCAGC
AATCAGGTGC ATTTTTATGA TGATAAGGAC AAGGAACTCA CCTATCAGCG CAATGCCCCC
AAATGGGCGG TGCGTATCGC CCAGGCGATC GAACACAACG AGCTGCTGCT CTACTATCAG
CCCATCAAGG CGTTGGGGCC TCAGGGCAAG CAGCGCATGG AGGTTTTGTT GAGGATCCAG
GAACCCTGTG GGCGTATCCT GGCGCCGGCG CAGTTTATCG CCGCGGCCGA ACGCTTCAAG
CTGATGACAG ATGTGGATAA AGAGGTGATA CGTAAGACCT TCCTCTGGCT CTCTCTGCAT
GAGGAGCTGT GGGCGGATCA CTGCCTGTCG ATCAACCTCT CGGCCAACAG CCTGGGGGCC
GAGGGCATGG TGGACTATAT CATCGCTCAG TTGGAGCGTT TCGCCATCCC AAGTCAGTGC
ATCTGTTTCG AGATCACCGA GACCAGTGCG ATTCAGAATC GTAACCGGGC GATGGAGATG
CTCAATCAGC TGAAGAAGCA GGGCTTCTCC TTCGCCCTGG ACGACTTCGG TACCGGGTTT
GCTTCTTATG GTTACCTGCG GGAGCTGCCG GTGAACTATG TGAAGATCGA TGGCTGCTTC
ATCAAGTCCC TGGCCAGCAA TGCCAAGGAC TACGCCATCG TCAAATCGAT ACACGACGTC
TGCCGCGTGA TGGGCATAGA GACGGTGGCT GAGTTCGTGG AGAACCAGGA GATCATCGAG
CGCCTCAAGT CGATCGGCAT CAACTATGCC CAGGGCTATG CCATCGGTCG TCCCAAGAGC
CTGGATCAAT ACCTCACCGC GCCGACCGAC AATGTGCATC GGCTGATGGC CTAA
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| Protein sequence | MRISKKIVVF VAGFCLPAIM AISYGLNAWY ELRLSDLRQE MSQRAQQNIA HHLEEDLGQF
EMLAQLYGVP MALLPADQRQ TLSATWHAMA LSAHVSLYGV EDDGIRAFAE PSPETLALDL
DALWPELLNL DGVRTGFLLQ GKQGFLACVI PLSDNRRLLM VRRVDNQLFE HYQAYSSLAG
LRLATTTPSL LAQTSPQRVT LEVPSLLGDH SLLLDIELTQ RDSLVQSGPA TLVYLIGGIS
LLLLLLGYLW LRHGVVDPLK QLLRQLSRVD PTAKTYQPIR AKGTSEFMVI SEQVNSLLAR
IFQQKERSKI TLEAIAEAVI LTDSWAKVIY LNPQAERLLK VKAESAVGMN LDKVFRSEPE
LNQSLFAFMA SGTPTPMLSK VKFTSHTPRL MERSISNLKG PNNKIIGTVI VLRDITQEEL
LKHQLRRRAN FDNVTGLLNR CAFEERLQAF AEDAQTLAIC YFDLEQFKLI NDSCGHNAGD
AMLKMVAKAI QASLEGQGLL ARLGGDEFGL ALKDLGVVPL AQQVKQIINA VGKQVMEHHG
CHYHVGISAG VALARAPYIN ALELLKDADI ACIAAKRKGS NQVHFYDDKD KELTYQRNAP
KWAVRIAQAI EHNELLLYYQ PIKALGPQGK QRMEVLLRIQ EPCGRILAPA QFIAAAERFK
LMTDVDKEVI RKTFLWLSLH EELWADHCLS INLSANSLGA EGMVDYIIAQ LERFAIPSQC
ICFEITETSA IQNRNRAMEM LNQLKKQGFS FALDDFGTGF ASYGYLRELP VNYVKIDGCF
IKSLASNAKD YAIVKSIHDV CRVMGIETVA EFVENQEIIE RLKSIGINYA QGYAIGRPKS
LDQYLTAPTD NVHRLMA
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