| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3408 |
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| Symbol | |
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| ID | 4923562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4058620 |
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| End bp | 4059345 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165020 |
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| Product | hypothetical protein |
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| Protein accession | YP_001095533 |
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| Protein GI | 127514336 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0217] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAAGAG CATACCAGAA CCGCAAAGAA TCTATGGCCA AAACGGCTGG GCAAAAGACG
AGACTCTATT CTCGCTACGG CAAAGAACTC TATGTTTGCG CAAAGAACGG TGGCTTCGAT
CCTGACGGCA ACCTGGCACT GCGCCACATG ATCACCAAGG CTAAGAAAGA TCAGGTTCCT
GCTCATGTCA TCGAACGCGC CCTAGAGAAA GCCAGAGGCG GCGGCGGTGA AGACTATGAA
ACGGCGCGTT ACGAAGGCTT TGGTCCAGGC GGCACCATGG TAATCGTCGA CTGTCTGACC
GACAACGGCA AGCGCACCTT TACCGAGGTA CGTCAGGCCT TCGTGAAGAA CGACGCCAAG
CTGGGTAGCC CAGGCACAGT TGGCCACATG TTCGACCATC AAGCGGTATT TGCCTTCAAG
GGCGAAGATG AAGAAGCGGT ACTGGAAGCC CTGATGATGG CCGACGTCGA TGTGGCCGAT
ATCGAAGTGG AAGATGGCAT CATCAGCGTA TTCGCGCCAA ACACTGAGTT CTACAAGGCC
AAGACCGCCC TGAACGAAGC CTTCCCTGAG ACAGAGCTGG AAGTGGAAGA GATCGCCTTC
GTACCACAGA CCATGACAGA ACTCACCGAC CCGGAAGTGA TCGCTCAGTT CGAAAAATTC
CAGGCCGCAC TGGAAGATTG TGACGACGTA CAAAACGTCT ACCACAACGC CGACATCAAG
GCCTAA
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| Protein sequence | MGRAYQNRKE SMAKTAGQKT RLYSRYGKEL YVCAKNGGFD PDGNLALRHM ITKAKKDQVP
AHVIERALEK ARGGGGEDYE TARYEGFGPG GTMVIVDCLT DNGKRTFTEV RQAFVKNDAK
LGSPGTVGHM FDHQAVFAFK GEDEEAVLEA LMMADVDVAD IEVEDGIISV FAPNTEFYKA
KTALNEAFPE TELEVEEIAF VPQTMTELTD PEVIAQFEKF QAALEDCDDV QNVYHNADIK
A
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