| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3406 |
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| Symbol | |
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| ID | 4923560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4056389 |
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| End bp | 4057465 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165018 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001095531 |
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| Protein GI | 127514334 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAC GTCGCATATT TATTGTGCTA CCGCTGCTGT TATTGGCTGT GGTAGTTGGA
GGCTACTACT GGTGGAGTCA GGTTCGGTTT ATCGAATCGA CCGACAACGC CTATGTAGAG
GCCGATATCT CTAATATCAG TGTCAAGGTG CCGGGTTATG TGGTGACCGC TAAGGTGACA
GATAACCAGC ATGTGGAGCA GGGGCAGCTG CTGGCCGAGC TGGAGTCGAA CCAGTACCGC
GCCAAGGTGA GCCAGAGTCA GGCGAGCCTG CAGAGCAGTC AGGCAGAGCT GCAGACCCTG
TCGGCCAAGG TGACGCTGCA ACAGGCGATC ATACGTCAGG CGGCCGCCGG TGTGGCCAGT
GCCGAGGCGG AGAAGATCCG CGCCGAGCAG CAGCTCAAAC GCACTACCAA ACTAAAGCAC
AGAGATTACA GCTCACAAGA TGAGGTGGAT CAGGCGACTG CCGCCTTCGA TTCGGCCGTG
GGCCACCTGG ATGAGGCCAA GGCGGCCCTG GTGGCCAAGC AGGCTGAGCT GGCGGTGCTT
AACGCTCAGC TGAATCAGAG TCAGTCACAG GTGGCCCAGG CCAAGGCCGG CCTTGAGCTG
GCAGAGATCC AGCTGGCCGA TACCCAGATC AGAGCCCCCT TCTCCGGGGT GATTGGCAAG
CGCGGCGCCC TGACCGGCCA GTATGTGCAG CCGGGGCAGT CGCTCTACAG TTTGGTGCCG
GATGGCGCGG TGTGGATCAC CGCCAACTTC AAGGAGACCC AGATCCAGCA TATGCAGCCT
GGGCAGTTGG TTCAGGTTCA TCTCGACGCG TTTCCCGACC AGAGCTTTAC TGGTGTGATC
GATAGCCTGG CCCCCGCCTC TGGCGCCAAA TTCAGCCTGT TGCCGGCGGA AAACGCCACC
GGTAACTTCA CCAAGATAGT GCAGCGTATT CCGGTGCGGA TCCGTTTGGA TCTGGATGAT
CAGACCAACA TAGTTCCCGG CCTCAGCGCC GTGGTGAAGG TGGATACCCG AGGCGCGCCG
AAAGACACAG TGATCGCCAG CAATCGTAAG CAGGTTTCGG TTAAGGCCAC CCAATGA
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| Protein sequence | MSKRRIFIVL PLLLLAVVVG GYYWWSQVRF IESTDNAYVE ADISNISVKV PGYVVTAKVT
DNQHVEQGQL LAELESNQYR AKVSQSQASL QSSQAELQTL SAKVTLQQAI IRQAAAGVAS
AEAEKIRAEQ QLKRTTKLKH RDYSSQDEVD QATAAFDSAV GHLDEAKAAL VAKQAELAVL
NAQLNQSQSQ VAQAKAGLEL AEIQLADTQI RAPFSGVIGK RGALTGQYVQ PGQSLYSLVP
DGAVWITANF KETQIQHMQP GQLVQVHLDA FPDQSFTGVI DSLAPASGAK FSLLPAENAT
GNFTKIVQRI PVRIRLDLDD QTNIVPGLSA VVKVDTRGAP KDTVIASNRK QVSVKATQ
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