| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3405 |
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| Symbol | |
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| ID | 4923708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4054776 |
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| End bp | 4056392 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165017 |
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| Product | EmrB/QacA family drug resistance transporter |
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| Protein accession | YP_001095530 |
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| Protein GI | 127514333 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCG TGAGCGCCAC CCAGGAAATT CCTGCCGAGA TAGCAGAGCA AGTCGTTCCT
CCCCAGGCGA CTAAGCCCCA GGGCTATGAG CGCGGCAGCT TTCGCTCCTG GGTCGCCGTG
TTTGCCGGCC TGCTGGGCGC CTTCATGGCG ATCCTGGATA TTCAGATCAC CAACGCCTCG
ATGAAGGAGA TCCAGGGCAG TCTGGGCGCG ACGTTGGAGG AGGGGTCCTG GATAGCCACC
GCCTACCTGG TGGCCGAGAT GATTGCCATC CCGCTATCGG GCTGGCTGAG TCAGGGGTTG
TCGGTTAGGC GATATCTGCT GTGGACCACG GCGGCCTTCA TCTTGGCTTC GTTTCTCTGT
TCGCTGGCCT GGAATCTGGA GGCGATGATC GCCTTTCGCG CCCTGCAGGG CTTCTTCGGC
GGCGCGCTGA TCCCGCTGGC CTTTCGGCTG ATCTTGGAGC TGCTCCCCAA GGAGAAACGT
GCCACAGGCA TGGCGCTGTT TGGTGTCACC GCCACCTTCG CGCCATCTAT CGGCCCCACC
CTGGGCGGCT GGCTCACCGA GCAGTTTAGC TGGCACTATC TCTTCTATAT TAATATTCCC
CCCGGGCTGC TGGTGATGGC CATGTTGGCC TATGGTTTGA GAGCTCAGGC TATCGATTGG
GATAAGCTGA AGAACGCCGA TTACTCTGGC ATAGTCACCA TGGCGCTGGG CATGGGGTGC
CTCGAGGTGG TGCTGGAGGA GGGCAATCGT AAGGATTGGT TTGGTTCAGA GCTGATCCAG
AATCTAGCGA TCGTTGCCGC CATCAACATA GCCCTGTTTG TCTTTATTCA GCTGCGAAAG
TCATCGCCGC TGGTGAACCT CAGGCTACTG GGGCAGCGTG ATTTCGCCCT GTCGACCTTG
GCCTATTTTC TGCTGGGAAT GGCGCTGTTT TCGGCTATCT ATATGATCCC CCTCTATCTG
TCGCAGATCC ATGACTATAG TCCGCTGGAG ATCGGTGAGG TGATCATGTG GATGGGCTTT
CCTCAGCTGC TGGTACTGCC TCTGGTGCCG AGATTGCTGC AGAGATTCGA CGGGCGGTAC
CTGGCCGCCT TCGGTTTTAG CATGTTTGCC CTGAGTTACT ACATGAACAG CCACATGACG
CTGGACTTTG CCGGTGAGCA GATGATCGCG GCCCAGGTGG TCAGGGCCCT TGGTCAGCCC
TTTATCCTGG TGCCTATCGG TATTATTGCG ACCATGCATA TCAGCGCCCA GCAGACGCCG
TCGGCCTCGA CCGTGCTCAA TGTGATCCGT AATCTCGGCG GCGCCTTCGG TATCGCCCTG
GTGGCCACCC TGATCGACAA TCAGTCGCGT ACCCATCTGG CGGACATGAA ACAGACGGTG
GCGGCGGTGA GTGGCCAGGC CTATCAATAT CTGCAGCAGA CCAGTCAGCT GTTTGTGCAG
GCAGGCTCGG ATCCCGTAAC CGCCCAGGCG CAGGCCAAGG CCATGTTGGC CAAGACCATG
ACCCAGCAGG CCTACATTCA GGCCTACAAC GATGTGTTTC TGATCATCTC TGTGCTGCTG
ATGCTGGCCG TGGTGGCCGT ACTGATGATC CGCAAGCCTA AGCCCGACGC CGCCTAG
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| Protein sequence | MSSVSATQEI PAEIAEQVVP PQATKPQGYE RGSFRSWVAV FAGLLGAFMA ILDIQITNAS
MKEIQGSLGA TLEEGSWIAT AYLVAEMIAI PLSGWLSQGL SVRRYLLWTT AAFILASFLC
SLAWNLEAMI AFRALQGFFG GALIPLAFRL ILELLPKEKR ATGMALFGVT ATFAPSIGPT
LGGWLTEQFS WHYLFYINIP PGLLVMAMLA YGLRAQAIDW DKLKNADYSG IVTMALGMGC
LEVVLEEGNR KDWFGSELIQ NLAIVAAINI ALFVFIQLRK SSPLVNLRLL GQRDFALSTL
AYFLLGMALF SAIYMIPLYL SQIHDYSPLE IGEVIMWMGF PQLLVLPLVP RLLQRFDGRY
LAAFGFSMFA LSYYMNSHMT LDFAGEQMIA AQVVRALGQP FILVPIGIIA TMHISAQQTP
SASTVLNVIR NLGGAFGIAL VATLIDNQSR THLADMKQTV AAVSGQAYQY LQQTSQLFVQ
AGSDPVTAQA QAKAMLAKTM TQQAYIQAYN DVFLIISVLL MLAVVAVLMI RKPKPDAA
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