| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3402 |
|---|
| Symbol | |
|---|
| ID | 4923705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4052425 |
|---|
| End bp | 4053393 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640165014 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001095527 |
|---|
| Protein GI | 127514330 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00371017 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAT CTTCTCCTTC AAGGCCCATC GTCTCCCTGA GCGGCGTCGC CAAGCGCTAT
GCCAAGGTAT CGGCCCTCGA ACGTATCGAC TTCGAACTCT TTCCCGGCGA AGTCATGGGG
CTGTTCGGCC ACAATGGCGC GGGCAAGACC ACCATAATGA AGCTGATCCT GGGGATCATC
CCGGCCTCAG ACGGTCAGGT AAAGGTATTC GGCCAGGATC CTCTCTCCAA ACAGGCCTTC
GAGGCGCGCA AGCAGGTCGG CTACCTGCCG GAAAATGTCA GCTTCTACGA CCAGCTCACC
GGCCGCGAGG TACTGCGCTA CTTCGCCCGG CTCAAGTCTG TACCCAAACA GGCGATCGAA
CAGCTGCTGG AACAGGTAGG CCTGACCCAC GCCATGGACC GCCAGGTGAA GACCTACTCT
AAGGGGATGC GTCAGCGGCT GGGGCTGGCC CAGGCCTTCC TCGGCAGCCC CAAGTTGCTG
CTGCTGGATG AACCGACCGT GGGGCTGGAT CCCATCGCCA CCCAGGAGTT TTACGCCAGC
GTCGATAAGC TCAAGAGCGA GGGGGCCAGC ATCATACTCT GCTCCCATGT GCTGCCGGGC
GTCGAGCAGC ATATCGACCG CGCGCTGATC ATCTCAGGCG GTCGCCTGCT GGCCAAGGGC
AGCCTGAGCG AGCTCAGACA ACAGGCCCAG CTCCCCGTCG CCATCAAGAC CCAAGGACTC
AACGGCGCCC TGAAACAGGA TGCCCGCTTC ACCCCCTATC TCATCGCCCC GGATCAGCTG
CTGGTGCCCG AGCAGGAGAA ACTCGCCATC ATACGTCAGC TGGTAGAACT GGATCAGCTG
GGGGATATTC GTGTCGAGCC GGCGGATCTG GAACGTGTCT ATCAGCACTA CCTGGGTCAG
CGCCCAAGTA AGGCGCATAA AGGGGACAAC GAAATAGAGA TTAGCCATCA AGGAGGGCAG
ATACAATGA
|
|---|
| Protein sequence | MQASSPSRPI VSLSGVAKRY AKVSALERID FELFPGEVMG LFGHNGAGKT TIMKLILGII
PASDGQVKVF GQDPLSKQAF EARKQVGYLP ENVSFYDQLT GREVLRYFAR LKSVPKQAIE
QLLEQVGLTH AMDRQVKTYS KGMRQRLGLA QAFLGSPKLL LLDEPTVGLD PIATQEFYAS
VDKLKSEGAS IILCSHVLPG VEQHIDRALI ISGGRLLAKG SLSELRQQAQ LPVAIKTQGL
NGALKQDARF TPYLIAPDQL LVPEQEKLAI IRQLVELDQL GDIRVEPADL ERVYQHYLGQ
RPSKAHKGDN EIEISHQGGQ IQ
|
|---|
| |