Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3401 |
Symbol | |
ID | 4923704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4051047 |
End bp | 4052420 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640165013 |
Product | periplasmic copper-binding |
Protein accession | YP_001095526 |
Protein GI | 127514329 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3420] Nitrous oxidase accessory protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000011758 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTTGA GGCTTAGGCT AGCTCATGGC CTGGGTCTTT TTCACCAGTG CAGCCTGCTC GCTTCTAGTC TCTTCAGATT TAGCCTACTC TTTTTCAGCC TGCTCTCTTT CAGCCCGCTT AGTCAGGCCG CCTATATCGA GGTGAGTCCA GAGCAAGACC TGCAGCAGGT GCTCGACCAG GCTCAGATGG GCGATAATAT TCAGTTGCAG CCGGGTCGCT ACCTTGGCAA CTTCGTCATC AAACAGGGGA TACGCCTTAT TGGCGCCGAC GACTATACCA GCATCATAGA CGCCCAAGGC AAGGGCAATG CCCTGCTGCT GCAAAGCTCC AAGGTCACCA TAGAGAGACT CAAGATAGTC AACTGGGGCG ACGATCTTAC CGCCCAGGAT GCCGGCATCT ATTCGGATCA GAGCGCCAGC GAACTCGTCA TCAGAGAGAA CCGCCTACAG GGCGACGGCT TCGGTATCTG GCTGCAAAAA GGCAAGGAGA TCAAGGTTCA CCATAACCGC ATTCAGGGCA ATCCGGGGCT GCGCTCCGCC GACAGAGGCA ACGGCATTCA GCTCTCCATA GTGCAGAACG TCGAGGTCAG CGACAACGAG GTCAACCAGA CCCGCGACGG CATCTACATC ATCTCCAGCC AACACAACAC GATTAAAAAC AACACCATGC ATAACCTGCG CTACGGGATC CACTACATGT ATTCCCACAG TAATCGCGTG CAGGACAACC TGGCCTACGA CACCCGCGCC GGTTATGCCC TGATGAGTTC ACGCCAGCTC ACCGTGAGCG GCAACGAGAG CCGCGACAGC CAGGACTACG GCTTCTTGAT GAACTTCATC ACCTACTCGG AGATCAGCCA TAACCGCATC TATCGAGTCT GGACCAAGCC GGAAAACAAG GTGCTGGGTC GTGAGGGCAA GGGGCTGTTT GTCTATAACT CGGCCTACAA CAGCATCAAT CACAACCTGA TCGACACCGC CGAGATCGGC ATCCACCTCA CCGCAGGCTC TGAGCACACC AAGGTATTTG GTAACAGCTT CATCAACAAT CCGGTGCAGG TGAAATATGT GGCCAACCGT CAGGCCGAAT GGAGCCAGGA TGGCAGAGGC AACTTCTGGA GCAACTACCT GGGCTGGGAT CTCGACAACG ATGGCTTCGG CGATCGCCCC TTCGAGCCCA ACGACGGCAT CGACAAGCTG ATCTGGCAAT ACCCTGAGGC CAAGATGCTA CTGGACAGCC CGGCGGTGCT TATCCTGCGC TGGATTCAGA CCCAGTTTCC CGTGCTCAAA CCCGTGGGCG TCAAAGACAG TTTTCCACTC ATGCAGGCGC CACCTCTGGC TGGCCAGCAG GCAGTAATTA ATGAGGCAGA GTGA
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Protein sequence | MALRLRLAHG LGLFHQCSLL ASSLFRFSLL FFSLLSFSPL SQAAYIEVSP EQDLQQVLDQ AQMGDNIQLQ PGRYLGNFVI KQGIRLIGAD DYTSIIDAQG KGNALLLQSS KVTIERLKIV NWGDDLTAQD AGIYSDQSAS ELVIRENRLQ GDGFGIWLQK GKEIKVHHNR IQGNPGLRSA DRGNGIQLSI VQNVEVSDNE VNQTRDGIYI ISSQHNTIKN NTMHNLRYGI HYMYSHSNRV QDNLAYDTRA GYALMSSRQL TVSGNESRDS QDYGFLMNFI TYSEISHNRI YRVWTKPENK VLGREGKGLF VYNSAYNSIN HNLIDTAEIG IHLTAGSEHT KVFGNSFINN PVQVKYVANR QAEWSQDGRG NFWSNYLGWD LDNDGFGDRP FEPNDGIDKL IWQYPEAKML LDSPAVLILR WIQTQFPVLK PVGVKDSFPL MQAPPLAGQQ AVINEAE
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