Gene Shew_3401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3401 
Symbol 
ID4923704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4051047 
End bp4052420 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content56% 
IMG OID640165013 
Productperiplasmic copper-binding 
Protein accessionYP_001095526 
Protein GI127514329 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3420] Nitrous oxidase accessory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000011758 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTTGA GGCTTAGGCT AGCTCATGGC CTGGGTCTTT TTCACCAGTG CAGCCTGCTC 
GCTTCTAGTC TCTTCAGATT TAGCCTACTC TTTTTCAGCC TGCTCTCTTT CAGCCCGCTT
AGTCAGGCCG CCTATATCGA GGTGAGTCCA GAGCAAGACC TGCAGCAGGT GCTCGACCAG
GCTCAGATGG GCGATAATAT TCAGTTGCAG CCGGGTCGCT ACCTTGGCAA CTTCGTCATC
AAACAGGGGA TACGCCTTAT TGGCGCCGAC GACTATACCA GCATCATAGA CGCCCAAGGC
AAGGGCAATG CCCTGCTGCT GCAAAGCTCC AAGGTCACCA TAGAGAGACT CAAGATAGTC
AACTGGGGCG ACGATCTTAC CGCCCAGGAT GCCGGCATCT ATTCGGATCA GAGCGCCAGC
GAACTCGTCA TCAGAGAGAA CCGCCTACAG GGCGACGGCT TCGGTATCTG GCTGCAAAAA
GGCAAGGAGA TCAAGGTTCA CCATAACCGC ATTCAGGGCA ATCCGGGGCT GCGCTCCGCC
GACAGAGGCA ACGGCATTCA GCTCTCCATA GTGCAGAACG TCGAGGTCAG CGACAACGAG
GTCAACCAGA CCCGCGACGG CATCTACATC ATCTCCAGCC AACACAACAC GATTAAAAAC
AACACCATGC ATAACCTGCG CTACGGGATC CACTACATGT ATTCCCACAG TAATCGCGTG
CAGGACAACC TGGCCTACGA CACCCGCGCC GGTTATGCCC TGATGAGTTC ACGCCAGCTC
ACCGTGAGCG GCAACGAGAG CCGCGACAGC CAGGACTACG GCTTCTTGAT GAACTTCATC
ACCTACTCGG AGATCAGCCA TAACCGCATC TATCGAGTCT GGACCAAGCC GGAAAACAAG
GTGCTGGGTC GTGAGGGCAA GGGGCTGTTT GTCTATAACT CGGCCTACAA CAGCATCAAT
CACAACCTGA TCGACACCGC CGAGATCGGC ATCCACCTCA CCGCAGGCTC TGAGCACACC
AAGGTATTTG GTAACAGCTT CATCAACAAT CCGGTGCAGG TGAAATATGT GGCCAACCGT
CAGGCCGAAT GGAGCCAGGA TGGCAGAGGC AACTTCTGGA GCAACTACCT GGGCTGGGAT
CTCGACAACG ATGGCTTCGG CGATCGCCCC TTCGAGCCCA ACGACGGCAT CGACAAGCTG
ATCTGGCAAT ACCCTGAGGC CAAGATGCTA CTGGACAGCC CGGCGGTGCT TATCCTGCGC
TGGATTCAGA CCCAGTTTCC CGTGCTCAAA CCCGTGGGCG TCAAAGACAG TTTTCCACTC
ATGCAGGCGC CACCTCTGGC TGGCCAGCAG GCAGTAATTA ATGAGGCAGA GTGA
 
Protein sequence
MALRLRLAHG LGLFHQCSLL ASSLFRFSLL FFSLLSFSPL SQAAYIEVSP EQDLQQVLDQ 
AQMGDNIQLQ PGRYLGNFVI KQGIRLIGAD DYTSIIDAQG KGNALLLQSS KVTIERLKIV
NWGDDLTAQD AGIYSDQSAS ELVIRENRLQ GDGFGIWLQK GKEIKVHHNR IQGNPGLRSA
DRGNGIQLSI VQNVEVSDNE VNQTRDGIYI ISSQHNTIKN NTMHNLRYGI HYMYSHSNRV
QDNLAYDTRA GYALMSSRQL TVSGNESRDS QDYGFLMNFI TYSEISHNRI YRVWTKPENK
VLGREGKGLF VYNSAYNSIN HNLIDTAEIG IHLTAGSEHT KVFGNSFINN PVQVKYVANR
QAEWSQDGRG NFWSNYLGWD LDNDGFGDRP FEPNDGIDKL IWQYPEAKML LDSPAVLILR
WIQTQFPVLK PVGVKDSFPL MQAPPLAGQQ AVINEAE