| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3394 |
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| Symbol | |
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| ID | 4923697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4042979 |
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| End bp | 4043812 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640165006 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001095519 |
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| Protein GI | 127514322 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00053127 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAA ATGGTCTGGA GCAGGAGCTG GCGCAACTGC AAAATGTCTA CAACCTGTTG
ACCGAGTTTC TGGTGAAGTA CAGCTTCCAG CTGGTCGGCG CGCTGCTTAT CTTCCTCTTG
GGACTCTGGG TCGCCAACAA GATCTCCAAC CTGGTGGCCA AGCAGTTTGA GAAGCATGAG
ATAGACATCA CCCTGAGCAA CTTCGTCTCC AATCTGGTGC GCATTCTCAT CATAGTCATG
GTGGGGGTCA TCGCCCTGGG CAAGCTGGGG ATCAGCATCA CGCCCATGGT GGCGGCTATC
GGTGCGGCCT CTCTGGGTGC TGGCCTGGCC TTGCAGGGGA TGCTCTCTAA CTACGCGGCG
GGCGTCACCA TAATCGTTAC CCGCCCCTTC GTGGTGGGCA ACACCATAGA GATCCAGGGG
GTCAGCGGCG TGGTCAAGAG CATCCACCTG GGACTGACTC TGCTCACCAA TGAGGAAGGC
GAGGTGATCA GCATCCCCAA CAAACATATC GTCGGCGAGA TCCTGCACAA CTCATTCAGC
GACAAGCTGG TCGAGATACG TTTCAACATC AGCTATGCCA GCGATGCCAA CCAGGTGCTG
GCCATCGCCC AACAGGTGCT GGATGCCAAC GAAGAGGTGA ATCAGGAGCG TGCCCCTCAG
ATAGGGATCA ACGGCTTCAA CAGCATTGGC TTAGAGATAG GCCTGCGTTA CTGGGTGCCC
ACCAACCGCT ACTACCAGAA CAAGTATCAG GTCAACCTGG AGCTGATCAA CGCACTGCGT
CAGGCCGGCA TAGAGATCCC CTGCCCGGTA CGCGAAATTC ATATCGAGCG CTAA
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| Protein sequence | MNENGLEQEL AQLQNVYNLL TEFLVKYSFQ LVGALLIFLL GLWVANKISN LVAKQFEKHE
IDITLSNFVS NLVRILIIVM VGVIALGKLG ISITPMVAAI GAASLGAGLA LQGMLSNYAA
GVTIIVTRPF VVGNTIEIQG VSGVVKSIHL GLTLLTNEEG EVISIPNKHI VGEILHNSFS
DKLVEIRFNI SYASDANQVL AIAQQVLDAN EEVNQERAPQ IGINGFNSIG LEIGLRYWVP
TNRYYQNKYQ VNLELINALR QAGIEIPCPV REIHIER
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