| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3392 |
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| Symbol | |
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| ID | 4923695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4040893 |
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| End bp | 4042068 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165004 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001095517 |
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| Protein GI | 127514320 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000026968 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAT TTCAAGCGAT TGATGTTAAT GAGTATTATG ACCAAGCTAC CTTTGAGCGT
ATCAAGGCGT TTGCTCAGGA TAAACCGACA CCTTTCGTGG TGATTGACAC TAAAATCATT
GCAAAACAAT ATGATGACAT GGTGCATAAC TTTCCTTATG CCAGTATCTA CTATGCCGTC
AAGGCCAACC CGGCCAAGGA GGTATTGACC CTGCTGCGTG ACCGTGGCGC CAATTTCGAT
ATCGCCTCTA TCTATGAGCT GGATATGGTG AGCGACATCG GCGTGACGCC TGACAGAGTC
AGCTATGGCA ATACCATCAA GAAGCGTAAA GATGTGCGCG CCTTCTATGA GCGTGGCGTG
CGTATGTACG CCTCTGATTC CGAAGCCGAT CTGCGTATGA TTGCCGAGGA AGCCCCCGGT
TCTCGCGTCT ATGTGCGCAT CCTGACCGAA GGCACCCACA CCGCTGACTG GCCCCTATCG
CGTAAGTTCG GCTGCCAGAA TGAGATGGCC TTCGAGCTGT TGGTGCTGGC CAAGACGCTG
GGACTCGAGC CCTATGGCAT CTCGTTTCAT GTGGGCTCAC AGCAACGCGA CATAGGAGCC
TGGGACTCGG CTATCGCCAA GGTGAAGAGC ATCTTCGAGC GTCTGCGTGA AGAGCATGGC
ATAGAGCTGA AGATGATCAA CCTGGGCGGC GGTTTCCCGG CGAATTATCT GGACAAGACC
AACGAGCTGG GTACCTACGC CGAGCAGATC ACCCACTTCC TCAAAGAGGA CTTTGGCGAT
CAGCTGCCGC AGATCATCCT GGAACCTGGC CGTTCGCTAC TCTCTAATGC CGGCGTGCTG
GTGTCTGAGG TGGTGCTAAT CAGCAAGAAG TCGCAGACGG CGTTGGAGCG CTGGGTATTT
ACCGACGTGG GTAAGTTCTC TGGCCTGATT GAGACCATGG ATGAAGCGAT CAAATTCCCC
ATCTATACCG AGCGTCAGGG TGAGTTGGAT CGCTGCGTGA TTGCCGGCCC GACCTGTGAT
AGTGCCGACA TCATGTATGA GCACTACAGC TACGGCCTGC CGCTGGATCT GGCAATAGGC
GATCGCATGT ACTGGCTGAC GGCCGGCGCC TATACCACCA CCTATTCGGC GGTCTGCTTC
AATGGCTTCC CGCCGCTGAA GGATTACTAT CTGTAG
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| Protein sequence | MSQFQAIDVN EYYDQATFER IKAFAQDKPT PFVVIDTKII AKQYDDMVHN FPYASIYYAV
KANPAKEVLT LLRDRGANFD IASIYELDMV SDIGVTPDRV SYGNTIKKRK DVRAFYERGV
RMYASDSEAD LRMIAEEAPG SRVYVRILTE GTHTADWPLS RKFGCQNEMA FELLVLAKTL
GLEPYGISFH VGSQQRDIGA WDSAIAKVKS IFERLREEHG IELKMINLGG GFPANYLDKT
NELGTYAEQI THFLKEDFGD QLPQIILEPG RSLLSNAGVL VSEVVLISKK SQTALERWVF
TDVGKFSGLI ETMDEAIKFP IYTERQGELD RCVIAGPTCD SADIMYEHYS YGLPLDLAIG
DRMYWLTAGA YTTTYSAVCF NGFPPLKDYY L
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